Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00406 ATGTTTTTTTGTGTTATAGATGGATTTGGTGAAAAGGGCAAGCCAGCTCATGGTGATGAAGGTGCAGTTCCACCTAATGCAATACAGATTGGTTATGAAATTTGTTTTTTTTTTTTTCTTCCTTTTTTCCTTTCCAGTTCTGCTACAAACAAATTGATTACTGCTAAGGATCATGCTTCTGTTCAGATCAGCATAGGTCATTTGGATGAGAGCGGTCTTTACAATTGTCAATACTTGACTTTTGCTCTCTGTGGCTTTACTCGTGCTCAGGTGGATCAAGATTCATAA 288 0.375 MFFCVIDGFGEKGKPAHGDEGAVPPNAIQIGYEICFFFFLPFFLSSSATNKLITAKDHASVQISIGHLDESGLYNCQYLTFALCGFTRAQVDQDS 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00406 95 PANTHER 40S RIBOSOMAL PROTEIN S21 46 95 IPR001931 GO:0003735|GO:0005840|GO:0006412
Trre10g00406 95 Gene3D - 41 95 IPR038579 -
Trre10g00406 95 Pfam Ribosomal protein S21e 47 94 IPR001931 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00406 Trre-Chr10 2707513 2708005 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00406 47 95 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 73.469 4.98e-21 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00406 K02971 - han:110865804 80.8777