Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00398 ATGATCATAGGTAAAAAGTTTGAGGGTTGGGAATGTATAAATGGAGGGTTGCAGTGCTGTGGAAACTTGTCACCGGAACCACACTATCCGTCGATAACGAGGTACCCGAAAGGAACGTCACCGGCGGTGGAAGGATCATCAGAGGCAGCCATAAGTACTGTTGTTTTCTGTGTTATGGGAATGACTTGTGCTGCCTGTGCTGGATCTGTGGAGAAAGCCATCAAACGCTTACCTGGAATTCTAGAGGCTATGGTTGATGTCTTGAATGATAAAGCACAAGTTCAATATTATCCCTCCATTGTTAATGAAGAAAAGATACGTGAAGCCATTGAAGATGCTGGTTTTGAGGCCAAATCCATGGGAGAAAGTTCAAACACCGCGTCGCTTCAAATATGTCGAGTACACATAGGCGGCATGACTTGTACGTCTTGCTCCACCAGCTTAGAATCAGCTCTTCAATCACTTCGAGGGGTGCAAATAGCGCAAGTGGCGCTAGCAACCGAAGAAGCAGAAATTCGTTACAATCCGAATATCATAAGCTATAATCAACTAATGGAAGCTATAGTTGACACAGGTTTTAAACCTGTACTAATAAGCAAAGGAGAACACATTAGCAAAGTTGAACTTAAAATTGATGGCATAAAAAATGAGCAATCAATGAATATCATTGAACAATCTCTTAGGAAACTCCAAGGTGTTGAAACCATAGAAACATATCAAGATATTAACAACATTGTCTTAACTTATAAACCTTATATCACAGGACCAAGAACCTTCATTGAAGTTATTGAATCTACAGGATCAGGGTGTTTTAGAGCTGTGATATTTACAAATGATGGAGGAAGAAAAGCACATAAGCAAGAAGAAATTAATAGATACTTCAAATTATTAATTTGGAGTTTGGCTTTTACTGTTCCTGTTTTTTTGACATCTATGGTTCTTATGTATATACCTGGAGTTAAACATATTTTAGAAATCAAAATTGTCAATATGTTGAATATTGGATTGCTCATAAGGTGGGAATTTTCGACACCGGTTCAGTTCATCATAGGAAGAAGATTCTATGTTGGAGCTTATAAAGCTTTGAGGAAAGGTTATGCCAACATGGATGTTTTGATAGCATTGGGAACAAATGCAGCTTATTTCTATTCTGTCTATGTTGTTGGAAGAGCTGTTTTTTCGTCGCATTTCAAAGGAAGTGATTTTTTTGAAACAAGTTCTATGTTAATTTCTTTTATTCTACTAGGGAAGTATTTGGAAGTGTTGGCTAAAGGGAAAACATCACAAGCAATTGCAAAACTTATGGATTTGACACCGGATACAGCGATCTTATTAACTCAAGATGATAAGGGAAATGTTACAGGTGAAAGAGAAATTGATAGTAGGTTGATACAGAAGAATGATGTGATCAAAGTTGTGCCGGGCGCAAAAGTAGCATCGGATGGTTTTGTTGTTTGGGGACAAAGTCATGTGAATGAGAGTATGATAACTGGTGAGGCTAAGCCTGTTGCTAAGATTAAGGGTGATATGGTAATTGGTGGTACTGTGAATGAGAATGGTGTTTTGCATGTTAAGGTAACAAGGGTTGGTTCAGAAAGTGCACTTTCTCAGATTGTTAGACTTGTTGAGTCTGCTCAGATGGCTAAGGCTCCTGTTCAGAAATTTGCAGATCAGATTTCTAAATACTTTGTTCCTATAGTGATTGTAATATCTCTTACGACATGGATTTCTTGGTTTATAGCCGGAAAGTTGCATACATATCCAAAATCATGGATACCAAAATCAATGAATAGTTTTGAGCTTGCACTTCAGTTTGGGATTTCAGTAATGGTGATAGCTTGTCCATGTGCTCTAGGACTAGCCACTCCTACAGCCGTCATGGTTGGTACCGGAGTCGGTGCAACTCAAGGTGTGTTGATCAAAGGTGGTCAAGCATTAGAAAGTGCACACAAAGTGAATTGCATTGTGTTTGATAAGACAGGAACTCTCACTGTTGGAAAGCCATTGGTTGTAACCACAAAACTCTTCAATAATATGTCAGTTAAAGATTTCTATGAATTTGTTGTTGCAGCAGAGGTAAATAGTGAACATCCAATAGCAAAAGCCATTGTTGAGCATGCGAAAAATATTACACAAGATGAACAAAATCATTTGTGGCCAGAAGCAAAAGATTTTGTGTCTGTTGCAGGACATGGAGTGAAGGCCTTAGTTCAAAACAAGCAAATAATGGTTGGGAATAAAAAATTGATGCTAGATCATAACATAGTTATTTCAATAGAAGCCGAAGATATACTAGCAGAAGCCGAAAACAATGCTCAAACCGGGATATTAGTATCATTGGATGGAGAAGTTGTCGGTGTTCTTGCAGTGTCTGATCCGCTGAAACCTGATGCAAAAGAAGTTATATCTATTCTTAAATCCATGAAAATAAGGAGCATAATGGTGACAGGTGATAATTGGGGAACTGCACATTCTATTGCTAGACAAGCTGGTATTGAAACTGTCATGGCAGAGGCTCAACCCGAGACTAAAGCTACTAAAGTAAAAGAATTGCAGAATTCCGGCTATACAGTAGCGATGGTTGGAGACGGGATAAATGACTCGCCGGCACTAGTAGCAGCTGATGTTGGAATGGCAATAGGTGCTGGAACAGACATAGCTATTGAAGCAGCTGACATTGTTCTCATGAAGAGTAACTTAGAGGATATAATAACAGCCATTGACCTTGCAAAGAAAACTTTGACTCGTATACGTCTAAATTACATTTGGGCTCTTGGCTACAATCTTCTAGCAATTCCTGTTGCCGCTGGCCTCCTTTATCCGTCTACTAAATTTCGGTTACCACCTTGGGTTGCCGGAGCTGCAATGGCGGCCTCTTCTATTAGTGTTGTTTGTTCTTCCCTCTTGTTAAAGAAATATAAGAGACCAGACAAGCTTAACAACTTGGAGATGAATGATATTCAGATTGAATGA 2973 0.3898 MIIGKKFEGWECINGGLQCCGNLSPEPHYPSITRYPKGTSPAVEGSSEAAISTVVFCVMGMTCAACAGSVEKAIKRLPGILEAMVDVLNDKAQVQYYPSIVNEEKIREAIEDAGFEAKSMGESSNTASLQICRVHIGGMTCTSCSTSLESALQSLRGVQIAQVALATEEAEIRYNPNIISYNQLMEAIVDTGFKPVLISKGEHISKVELKIDGIKNEQSMNIIEQSLRKLQGVETIETYQDINNIVLTYKPYITGPRTFIEVIESTGSGCFRAVIFTNDGGRKAHKQEEINRYFKLLIWSLAFTVPVFLTSMVLMYIPGVKHILEIKIVNMLNIGLLIRWEFSTPVQFIIGRRFYVGAYKALRKGYANMDVLIALGTNAAYFYSVYVVGRAVFSSHFKGSDFFETSSMLISFILLGKYLEVLAKGKTSQAIAKLMDLTPDTAILLTQDDKGNVTGEREIDSRLIQKNDVIKVVPGAKVASDGFVVWGQSHVNESMITGEAKPVAKIKGDMVIGGTVNENGVLHVKVTRVGSESALSQIVRLVESAQMAKAPVQKFADQISKYFVPIVIVISLTTWISWFIAGKLHTYPKSWIPKSMNSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGATQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPLVVTTKLFNNMSVKDFYEFVVAAEVNSEHPIAKAIVEHAKNITQDEQNHLWPEAKDFVSVAGHGVKALVQNKQIMVGNKKLMLDHNIVISIEAEDILAEAENNAQTGILVSLDGEVVGVLAVSDPLKPDAKEVISILKSMKIRSIMVTGDNWGTAHSIARQAGIETVMAEAQPETKATKVKELQNSGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDIITAIDLAKKTLTRIRLNYIWALGYNLLAIPVAAGLLYPSTKFRLPPWVAGAAMAASSISVVCSSLLLKKYKRPDKLNNLEMNDIQIE 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00398 990 CDD HMA 58 118 IPR006121 GO:0046872
Trre10g00398 990 SFLD Haloacid Dehalogenase 638 912 - -
Trre10g00398 990 SUPERFAMILY HMA, heavy metal-associated domain 51 121 IPR036163 GO:0046872
Trre10g00398 990 ProSiteProfiles Heavy-metal-associated domain profile. 130 196 IPR006121 GO:0046872
Trre10g00398 990 Gene3D - 424 546 - -
Trre10g00398 990 Gene3D - 623 918 IPR023214 -
Trre10g00398 990 NCBIfam copper ion binding protein 56 117 IPR006122 GO:0005507
Trre10g00398 990 CDD P-type_ATPase_Cu-like 297 972 - -
Trre10g00398 990 SUPERFAMILY Calcium ATPase, transmembrane domain M 406 648 IPR023298 -
Trre10g00398 990 Gene3D - 201 275 - -
Trre10g00398 990 SUPERFAMILY HAD-like 655 967 IPR036412 -
Trre10g00398 990 PRINTS Copper-transporting ATPase 1 signature 108 128 - -
Trre10g00398 990 PRINTS Copper-transporting ATPase 1 signature 79 102 - -
Trre10g00398 990 PRINTS Copper-transporting ATPase 1 signature 154 175 - -
Trre10g00398 990 PRINTS Copper-transporting ATPase 1 signature 53 78 - -
Trre10g00398 990 Pfam Heavy-metal-associated domain 57 116 IPR006121 GO:0046872
Trre10g00398 990 Pfam Heavy-metal-associated domain 134 194 IPR006121 GO:0046872
Trre10g00398 990 PRINTS P-type cation-transporting ATPase superfamily signature 786 797 - -
Trre10g00398 990 PRINTS P-type cation-transporting ATPase superfamily signature 492 506 - -
Trre10g00398 990 PRINTS P-type cation-transporting ATPase superfamily signature 808 818 - -
Trre10g00398 990 PRINTS P-type cation-transporting ATPase superfamily signature 861 880 - -
Trre10g00398 990 PRINTS P-type cation-transporting ATPase superfamily signature 656 670 - -
Trre10g00398 990 PRINTS P-type cation-transporting ATPase superfamily signature 884 896 - -
Trre10g00398 990 ProSiteProfiles Heavy-metal-associated domain profile. 205 271 IPR006121 GO:0046872
Trre10g00398 990 Gene3D - 663 741 IPR023299 GO:0000166
Trre10g00398 990 Gene3D - 742 792 IPR023299 GO:0000166
Trre10g00398 990 ProSitePatterns Heavy-metal-associated domain. 58 87 IPR017969 GO:0046872
Trre10g00398 990 ProSitePatterns Heavy-metal-associated domain. 136 165 IPR017969 GO:0046872
Trre10g00398 990 ProSiteProfiles Heavy-metal-associated domain profile. 52 118 IPR006121 GO:0046872
Trre10g00398 990 FunFam Copper-transporting ATPase 1, putative 424 546 - -
Trre10g00398 990 Pfam E1-E2 ATPase 455 634 - -
Trre10g00398 990 FunFam Copper-transporting ATPase HMA5 51 122 - -
Trre10g00398 990 FunFam Probable copper-transporting ATPase HMA5 783 918 - -
Trre10g00398 990 SFLD p-type atpase 638 912 IPR044492 -
Trre10g00398 990 NCBIfam HAD-IC family P-type ATPase 409 940 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre10g00398 990 NCBIfam heavy metal translocating P-type ATPase 369 970 IPR027256 GO:0006812|GO:0016020|GO:0019829
Trre10g00398 990 SUPERFAMILY HMA, heavy metal-associated domain 127 201 IPR036163 GO:0046872
Trre10g00398 990 SUPERFAMILY Calcium ATPase, transduction domain A 456 542 IPR008250 -
Trre10g00398 990 Gene3D - 130 200 - -
Trre10g00398 990 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 20 986 - -
Trre10g00398 990 FunFam ATPase copper transporting beta 126 200 - -
Trre10g00398 990 Pfam haloacid dehalogenase-like hydrolase 652 875 - -
Trre10g00398 990 ProSitePatterns E1-E2 ATPases phosphorylation site. 658 664 IPR018303 -
Trre10g00398 990 SUPERFAMILY HMA, heavy metal-associated domain 202 270 IPR036163 GO:0046872
Trre10g00398 990 CDD HMA 136 195 IPR006121 GO:0046872
Trre10g00398 990 Gene3D - 47 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00398 Trre-Chr10 2592880 2597332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00398 51 990 Primary Pumps ATPases AT1G63440 70.869 0.0 1402