Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00394 ATGGATGAGAGAGAAGCTATGGCATTTTCTGATGGGTCAGGTTCATATTACATGCATAGAGCAGGAGGTGTTGGTGGGTCTGGTAGTGGAGGAATGTTTCAACAGACACCTTCTGGATTTAGAACTTTGTCTAATCCTCATGGTGGTTCTGATGGTTCTGCATTTTCAGTAGAGGTTCAACATGGTAGTTTTAATCATGGTGTTGTTAGCAATAGCATAGGTTCATCTTCTGGTACTGTAGTGCCTTATTCAAGTGATCAGCCTGTGAAAAAGAAAAGAGGGAGACCTAGAAAGTATGGTCCTGATGTACCTGTTTCTTTGAGACTCTCTCCTATGTCTGCCACTGCTAATTCCACTCCTGTCTCGGAGAAACGGCCGAGAGGGCGCCCTCCTGGAAGTGGAAGAAAGCAACAACTAGCTTCTCTAGGTGAATGGATGAACACTTCTGCCGGACAGGCTTTTTCACCCCATGTTATCACGATTGGAGTTCAGGAGGACATTGTAGCAAAGCTGTTGGCGGTTTCACAACATAGACCACGCGCTTTATGCATCTTGTCAGGAACTGGGACTGTATCTTCAGTCACTCTGCGCCAGCCTGCTTCTACTAGTGCCAGTGTTACTTATGAGGGGCGATTCCAAATATTATGCTTATCTGGTTCTTACTTGGTTGCTGAAGATGGTGGACCTCAAAATAGAACTGGTGGCATTAGTGTTTCTCTTTCTAGTCCGGATGGTCATGTTATCGGCGGTGGTGTTGCTAGGCTTATTGCTGCAAGCCCTGTCCAGGTGGTACTTTGCAGTTTTGTATATGGTGGCTCTAAGCCGAAGACAACAAAGCAAGGGACAACTACAAAAGATGACGATGATTCAGAGCCTCAGAGTAGTGACCAATTAGCTTCTCCTGGAAGTGCACCACCTAATCAAAACTACACAGCTTCTGGAACAGAAATGTGGCTTGGATCAAGGTCAGTAGATGTGAAAAATGCACATCCACACACTGGTATTGACCTGATGCATGGGTGA 1023 0.4565 MDEREAMAFSDGSGSYYMHRAGGVGGSGSGGMFQQTPSGFRTLSNPHGGSDGSAFSVEVQHGSFNHGVVSNSIGSSSGTVVPYSSDQPVKKKRGRPRKYGPDVPVSLRLSPMSATANSTPVSEKRPRGRPPGSGRKQQLASLGEWMNTSAGQAFSPHVITIGVQEDIVAKLLAVSQHRPRALCILSGTGTVSSVTLRQPASTSASVTYEGRFQILCLSGSYLVAEDGGPQNRTGGISVSLSSPDGHVIGGGVARLIAASPVQVVLCSFVYGGSKPKTTKQGTTTKDDDDSEPQSSDQLASPGSAPPNQNYTASGTEMWLGSRSVDVKNAHPHTGIDLMHG 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00394 340 MobiDBLite consensus disorder prediction 75 139 - -
Trre10g00394 340 Pfam Plants and Prokaryotes Conserved (PCC) domain 156 269 IPR005175 -
Trre10g00394 340 CDD DUF296 156 268 IPR005175 -
Trre10g00394 340 MobiDBLite consensus disorder prediction 276 323 - -
Trre10g00394 340 MobiDBLite consensus disorder prediction 294 318 - -
Trre10g00394 340 Gene3D - 156 283 - -
Trre10g00394 340 SUPERFAMILY AF0104/ALDC/Ptd012-like 152 270 - -
Trre10g00394 340 PRINTS AT-hook-like domain signature 90 100 IPR017956 GO:0003677
Trre10g00394 340 PRINTS AT-hook-like domain signature 122 133 IPR017956 GO:0003677
Trre10g00394 340 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 60 304 IPR039605 GO:0003680
Trre10g00394 340 ProSiteProfiles PPC domain profile profile. 151 290 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00394 Trre-Chr10 2577821 2580745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00394 1 340 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 50.131 3.76e-99 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00394 - - tpra:123911083 588.956