Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00392 ATGGGAAAGGGTAAACCTAGGGCTGTTGAAAAAGGTGTAGTAGGTCCAAATCTTAGTGTTTCATCTCCGACTATACCATCGGCGCCGGTATATTATCCTACTGAAGATGAATTCAAAGATCCTTTAGATTTTATTCATAAGATTAGACATGAAGCTGAACCTTTTGGAATTTGTAGAATTGTTCCTCCTAACAATTGGAAACCCCCTTTTGCATTGGATCTAGATTCTTTTACTTTTCCTACTAAAACTCAGGCGATTCATAAGCTTCAGGTTCGTCCTGCTGCTTCTGTTTCCAAAACTTTTGAGTTGGAGTATTCTAGGTTTTTGAAGGATCATTGTAGTAAAAAGCTTAAGAAGAAGATTGTGTTTGAAGGTGAGGATTTGGATTTGTGTAAGTTGTTTAATGCTGTTAAACGGTTTGGGGGGTATGATAAGGTTGTTGATGGAAAGAAATGGGGTGATGTTGCTCGGTTTGTGAAATCTTCGGGGAAGATTTCCGATTGTGCTAAGCATGTTTTGTGTCAGTTGTATAGAGAGCATCTTTATGATTACGAGAATTTTTGTAATCGGATTAATAAAGGAACAAATGGGAATTGTTGTAAGAAAAGTGTACAAGAGGATAGAAAGAGTGATCATGGGGTACAAACTTCGGTCAGTTCGGCGTCCAAGAAGCATCATGGGGTTGTAGATGGTTTAAAAGGTAAGGATAAGAAAGCAAGGGAAGAAAACCGTGATCAGATTTGTGAGCAATGTAAAAGTGGGCTGCACGGGGATGTGATGCTTTTGTGTGATAGGTGTGATAAAGGATGGCATATTTATTGTCTTTCACCGCCGTTGAAGCAAATTCCGCTGGGAAACTGGTATTGTTTCAACTGTTTGAGTTCTGATAGGGAGAGCTTTGGTTTTGTGCCTGGGAAGAAGTATTCGTTGGAAACATTTAAACGCACTGCGGATAGGTCGAGGAGGAGGTGGTTTGGTCAGGGACCTGTTTCAAGGGTGCAAATAGAGAAAAAATTCTGGGAGATTGTGGAGGGGTCGGTTGGTGCGGTCGAGGTAATGTATGGAAATGACTTGGATACGTCTCTCTATGGGAGTGGTTTCCCAAATGAAACTAATCAGAAACCACAATCTATTGATGACAAGTTATGGCAAGAATACTCTACTAACCCATGGAATCTGAATAACTTGCCTAAGTTGAAAGGCTCAATGCTTCGAGCTGTTCATCACAATATCACTGGTGTTATGGTACCGTGGCTGTATATTGGAATGTTATTCTCATCCTTTTGCTGGCATTTTGAGGATCACTGCTTTTATTCAATGAATTATCTACACTGGGGAGAGCCAAAGTGCTGGTACAGTGTTCCTGGTAGTCAAGCCAGGGCATTTGAGAAGGTGATGAGAAGCAGCCTTCCCGACCTTTTCGATGCACAACCTGATCTGCTTTTTCAGCTTGTTACCATGTTAAACCCATCCGTCTTGCAAGAACATGGAGTTCCTGTCTTCAGCACACTTCAGGAGCCTGGAAATTTTGTTATTACTTTCCCCAGATCTTACCATGGTGGTTTCAATCTTGGTCTGAATTGTGCAGAGGCAGTCAATTTTGCTCCAGCTGACTGGCTACCACACGGTACATTTGGAGCTGATCTCTATAAGCGGTTTCACAAAACAGCTGTCTTGTCTCATGAGGAGCTTCTTTGTGTAGTAGCCCAGTATGGTGATGTTGATGGCAGAGGGTCATCTTATTTGAAAGCGGAATTGTTGACAATAATTGATAGAGAAAAATCCTGGAGGGAGAAACTTTGGAAAAATGGAATAGTTAAATCTTCTCGTTTTGCTCCTCGGAAATGTCCCCAATACGTAGGAACTGAAGAGGATCCTGCATGCATTATTTGCCAGCAATATCTCTATTTCTCTGCAGTTGTATGCAGTTGCCGGCCATCATCTTTTGTGTGCCTGGAGCACTGGGAACACCTTTGTGAGTGCAAAACTTCTAAACTTCGTCTTCTCTATCGTCATTCACTTGGTGAATTGTATGACTTGGCATTTTCTATTGACAACGATACTTCTGAAGATAAAGCTGAGAGTAGAAGTGTAAAAAGGCAGTCTTCATGTCTGAGTGCTTTGACAAAAAAGGTGAAAGGAAGCTCCATTACTTTCACTCAACTTGCTACAGAATGGCTTCTGCAATCTAGTACTATTCTTCAGAACGTTTTTGTGACTGATGCGTCTGCTACCGCACTAAGGAAAGCTGAACAGTTTCTTTGGGCTGGTTCCGAGATGGATTCCGTTCGGGATATGGTAGAGAGTTTGACTGAAGCTCAGAAATGGGCAGAAGGGGTAAAAGATTGTGTGACAAAAATTGAGTCATGGTTGAATCATCAGGACTTAAGTTTAAAGAAAGTTCATTTAGAATATGTTGATGAGTTACTGAGATTTGACCCTGTACCATGCAATGAGCCTCATTATCATAAATTGAAGGAATATGCAGAAGAAGCAAGGATGTTAGTTCAGGAGATTGAAGCTGCTTTGTCAATGTGTTCCAATATGTCTGAGTTGGAACTTTTATACTCCAGAGCTTGTGGCTTACCCATCTACATGAAAGAGACTAAAAAATTAGAAGGGAAAATTTCTTCAACCAAGGCATGGATGGGTAGTGTCAGAAACTGCATCTCAGCTAGCGATCCTGCTGAATTAGATGTTGATGTTCTTTACAAGTTAACGTCAGAGATTGCGGATCTTCAAGTTCAACTCCCAGAGATAGATGCACTTCAGAATCTAATAAATCAGGCAGAATCTTGTAGTTCTCAATGTCGTTGTATATTAGAAGGTCCTATGAATCTCAAGAATGTTGGTTTGCTGCTTAAAGAATGGGACAGTTTTACAGTTGATGTACCGGACTTGAGGCTACTAAGGAATTACCATTCAGATGCTGTGTCATGGGTTTCTCACTTTAACGATGTTTTAGAGAGAGTTCACAGACAGGAAGATCAACATAATGCATTTGATGAACTGAAGAGCATTCTTGAAGAAGGTTTATCTTTGAAAATTCAAGTTGATGAGTTGCCTCTAGTTGAGATTGAGCTGAAGAAGGCTAATTGCCGACAGAAAGCTTCGAAGGCACATGATTCAAAGATGCCCCCGGAATTCATTCAGCAACTGCTGAAGGAGGCCACTATGCTAGGAATTGAGGGAGAGAAGCAATTCACCAGTTTATCTTGTGTGCTTGGTGTCGCCATGCGTTGGGAGGAAAGGGCAGGAGAGATTCTTTCACTTGAGGCTTCTATTTCTGACTTTGAGGACATGATAAGAGCTTCGGAAAATATATTTATTATTCTTGCTTCACTTAATGATGTCAAAGAAGCATTATCGGAAGCTAATTCCTGGTTAAGGAATTCAAAGCCATATTTAGTCTCTTCTAATTGTGTGTCAAACTCTGTGCGGAAAGTTGAGGACTTGCAGTTGTTGGTTTCTCAATCAAAGCATCTTAAAGTATCTTTGGAAGAAAGAAGGATGCTTGAATTAGTTTTGAATAACTGCAAAAAATGGGAGTGTGAAGCACATTCTCTACTTGATGATGCTCAGTGCTTATTTGAATTGGATAACACTGTTCATGGAATAAGCAGTGATTTATTGTTTGAAGTGGAAGATTTGATTGCAAGAATCCAGTCTGCCATATCATCTGGTGTATCTCTTGGTTTTGACTTCAGTGATATTTCAAAACTTCAAGCATCTTGTTCTACACTGCAGTGGTGCAAAAGAGCCCTATGTTTCTGCAACCATTCTCCTTCCTTAGAGGATGTTTTGGAAGTTGTGGAAGGCCTCTCTCATTCCTCTGTTTCTGGTGCTCTATTGAATGTACTGATTGATGCGGTTGAGTGGCTTAGGAGAGCGTTAGAGGGGATATCTAGACCTTGCAATTCTAGAAGATGCAAATTGACTGATATTGAAGATATTCTTACTGATTATCGGACTATTAAAATGACCTTTACGGAAGTAAATTGTCAACTTGAAGAAGCCATTGGAAAACATAGGTTGTGGCAAGAACAAGTGGATAAATTTAATAGACTAAGTTCTAGGGAACGAACTTGGTCATCAATATTGCAGCTCAAGGAACTGGGGGATTCCATTGCCTTTCGTTGTCCGGAACTTGATTTAATATCATCTGAAGTCGAGAAGGTGGAAAATTGGAAGAAAAGATGCATGGATAATATTGGACCTTTATTCCAAAATGAAAATTCACTTCTTCATGCACTGCAGAAGATAAATCAGACTCTAGATAGATCACTATACATATATGGCAAGTTACAAATTCGGAAGGAGCCAAACCTATGTAACTGCTGCTTCGTTGATTCTGAAGATCAGGAATCTCTTATTTGTTCCACTTGTATGGACCGCTATCACTTGCAGTGCATTGGACTAACAGCAAAAGACACTGGCCTTGGAGACTATAAGTGCTCTTACTGTGAAATTTTGAAGGGTAAATCACAGTATTCAAATGGAAGTTCCCTCCTGAGGTTTGAGAAGCATATTGAATTGAACATTCTTGTCGAACTTCTGTCTGATGCTGAACATTTCTTTTTCTGGGTTGACGAAAGAGATCTTCTGAAACAACTTATTGAGAAAGCTTTTGCATGCAAATCTGGCTTGAGAGAAATAGTGAACCTTTCATCAGCTTATGTCAATGAAGATATTTCCATCATCTCTGAAAAATTGACCATTGCTATAAAGGCTAGCAAAGTGGCTGGTGTCTATGATCAGGGTGGGAATTGTGACCTTGAGCTGGCTTTAGCAAGATACTTGTGGAAAATTCAAGTAAATATATTGTTAAGTGGTGAACAAAAGCCCACTGTTGAACAGATTCAGAAACATCTGAAAGAGGGAATGTCTATGGAAATATCCCCCAAAGATCACTATATGCTGAAACTTACAAATGTGAATTGTTTGGGCTTGCACTGGGTAGAACTAGCCAAAAAGGTATCAAATGATTCTGGAGCACTCGGCCTAGATAAAGTATATGAACTTGTAGTGGAAGGCGAAAACTTGCCTGTTGATGTAAATGAGGAACTCAGGATGTTAAGAGCTCGATGCATGCTATATTGCATTTGTCGAAAGCCCTTTGATCCCGGAAGGATGATTGCATGTTATCAATGTAATGAGTGGTATCACTTTGATTGTATGAAATTATCATGCACTCAAGATATCTACATTTGCCCTGCGTGTACCCCATGTACAGGATTGCCTACTAACCATGACAGATTAACTACTGGGAAACTTGAGGAGCCTAAAACACCTTCTCCCAGGCATACAAACCCTAGAAAGAAACAGAAGAGAGACATGTTTGCACCCAGGAATGAAGATGGTAGTGATTTTAGGTATTCAAATGGGACAAAATGTCTAAGATGGAAAAATCGAAAACCATTTAGAAGAGTAACTAAAAGACGTCTTGAACTTCAAAGTCTTTCTCCATTTCTATGCATACAACGATAA 5487 0.4002 MGKGKPRAVEKGVVGPNLSVSSPTIPSAPVYYPTEDEFKDPLDFIHKIRHEAEPFGICRIVPPNNWKPPFALDLDSFTFPTKTQAIHKLQVRPAASVSKTFELEYSRFLKDHCSKKLKKKIVFEGEDLDLCKLFNAVKRFGGYDKVVDGKKWGDVARFVKSSGKISDCAKHVLCQLYREHLYDYENFCNRINKGTNGNCCKKSVQEDRKSDHGVQTSVSSASKKHHGVVDGLKGKDKKAREENRDQICEQCKSGLHGDVMLLCDRCDKGWHIYCLSPPLKQIPLGNWYCFNCLSSDRESFGFVPGKKYSLETFKRTADRSRRRWFGQGPVSRVQIEKKFWEIVEGSVGAVEVMYGNDLDTSLYGSGFPNETNQKPQSIDDKLWQEYSTNPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGSQARAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQEHGVPVFSTLQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPHGTFGADLYKRFHKTAVLSHEELLCVVAQYGDVDGRGSSYLKAELLTIIDREKSWREKLWKNGIVKSSRFAPRKCPQYVGTEEDPACIICQQYLYFSAVVCSCRPSSFVCLEHWEHLCECKTSKLRLLYRHSLGELYDLAFSIDNDTSEDKAESRSVKRQSSCLSALTKKVKGSSITFTQLATEWLLQSSTILQNVFVTDASATALRKAEQFLWAGSEMDSVRDMVESLTEAQKWAEGVKDCVTKIESWLNHQDLSLKKVHLEYVDELLRFDPVPCNEPHYHKLKEYAEEARMLVQEIEAALSMCSNMSELELLYSRACGLPIYMKETKKLEGKISSTKAWMGSVRNCISASDPAELDVDVLYKLTSEIADLQVQLPEIDALQNLINQAESCSSQCRCILEGPMNLKNVGLLLKEWDSFTVDVPDLRLLRNYHSDAVSWVSHFNDVLERVHRQEDQHNAFDELKSILEEGLSLKIQVDELPLVEIELKKANCRQKASKAHDSKMPPEFIQQLLKEATMLGIEGEKQFTSLSCVLGVAMRWEERAGEILSLEASISDFEDMIRASENIFIILASLNDVKEALSEANSWLRNSKPYLVSSNCVSNSVRKVEDLQLLVSQSKHLKVSLEERRMLELVLNNCKKWECEAHSLLDDAQCLFELDNTVHGISSDLLFEVEDLIARIQSAISSGVSLGFDFSDISKLQASCSTLQWCKRALCFCNHSPSLEDVLEVVEGLSHSSVSGALLNVLIDAVEWLRRALEGISRPCNSRRCKLTDIEDILTDYRTIKMTFTEVNCQLEEAIGKHRLWQEQVDKFNRLSSRERTWSSILQLKELGDSIAFRCPELDLISSEVEKVENWKKRCMDNIGPLFQNENSLLHALQKINQTLDRSLYIYGKLQIRKEPNLCNCCFVDSEDQESLICSTCMDRYHLQCIGLTAKDTGLGDYKCSYCEILKGKSQYSNGSSLLRFEKHIELNILVELLSDAEHFFFWVDERDLLKQLIEKAFACKSGLREIVNLSSAYVNEDISIISEKLTIAIKASKVAGVYDQGGNCDLELALARYLWKIQVNILLSGEQKPTVEQIQKHLKEGMSMEISPKDHYMLKLTNVNCLGLHWVELAKKVSNDSGALGLDKVYELVVEGENLPVDVNEELRMLRARCMLYCICRKPFDPGRMIACYQCNEWYHFDCMKLSCTQDIYICPACTPCTGLPTNHDRLTTGKLEEPKTPSPRHTNPRKKQKRDMFAPRNEDGSDFRYSNGTKCLRWKNRKPFRRVTKRRLELQSLSPFLCIQR 1828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00392 1828 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1685 1742 IPR013083 -
Trre10g00392 1828 Coils Coil 825 845 - -
Trre10g00392 1828 MobiDBLite consensus disorder prediction 210 236 - -
Trre10g00392 1828 ProSitePatterns Zinc finger PHD-type signature. 1700 1740 IPR019786 -
Trre10g00392 1828 PANTHER LYSINE-SPECIFIC DEMETHYLASE 23 1083 - -
Trre10g00392 1828 SMART bright_3 96 190 IPR001606 GO:0003677
Trre10g00392 1828 SMART PHD_3 1699 1741 IPR001965 -
Trre10g00392 1828 SMART PHD_3 247 293 IPR001965 -
Trre10g00392 1828 SMART PHD_3 1443 1489 IPR001965 -
Trre10g00392 1828 Gene3D Cupin 28 536 - -
Trre10g00392 1828 SMART JmjN_1 27 68 IPR003349 -
Trre10g00392 1828 SUPERFAMILY FYVE/PHD zinc finger 241 295 IPR011011 -
Trre10g00392 1828 CDD PHD_RSF1 248 292 - -
Trre10g00392 1828 SUPERFAMILY ARID-like 75 192 IPR036431 GO:0003677
Trre10g00392 1828 Gene3D - 81 186 IPR036431 GO:0003677
Trre10g00392 1828 ProSiteProfiles ARID domain profile. 95 189 IPR001606 GO:0003677
Trre10g00392 1828 SUPERFAMILY FYVE/PHD zinc finger 1694 1747 IPR011011 -
Trre10g00392 1828 SMART ARID_2 95 185 - -
Trre10g00392 1828 FunFam Transcription factor jumonji (JmjC) domain-containing protein 14 118 - -
Trre10g00392 1828 Pfam ARID/BRIGHT DNA binding domain 103 185 IPR001606 GO:0003677
Trre10g00392 1828 Pfam PHD-finger 247 294 IPR019787 -
Trre10g00392 1828 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 295 IPR013083 -
Trre10g00392 1828 CDD ARID 99 185 - -
Trre10g00392 1828 ProSiteProfiles JmjN domain profile. 28 69 IPR003349 -
Trre10g00392 1828 ProSiteProfiles Zinc finger PHD-type profile. 245 295 IPR019787 -
Trre10g00392 1828 MobiDBLite consensus disorder prediction 1754 1791 - -
Trre10g00392 1828 Pfam jmjN domain 29 62 IPR003349 -
Trre10g00392 1828 ProSitePatterns Zinc finger PHD-type signature. 248 292 IPR019786 -
Trre10g00392 1828 Pfam JmjC domain, hydroxylase 418 534 IPR003347 -
Trre10g00392 1828 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1385 1492 IPR013083 -
Trre10g00392 1828 ProSiteProfiles JmjC domain profile. 385 551 IPR003347 -
Trre10g00392 1828 SUPERFAMILY Clavaminate synthase-like 378 566 - -
Trre10g00392 1828 SMART cupin_9 385 551 IPR003347 -
Trre10g00392 1828 Pfam C5HC2 zinc finger 628 679 IPR004198 -
Trre10g00392 1828 SUPERFAMILY FYVE/PHD zinc finger 1440 1490 IPR011011 -
Trre10g00392 1828 Pfam PLU-1-like protein 946 1189 IPR013637 -
Trre10g00392 1828 Pfam PLU-1-like protein 894 987 IPR013637 -
Trre10g00392 1828 Pfam PLU-1-like protein 1145 1418 IPR013637 -
Trre10g00392 1828 Pfam PLU-1-like protein 725 885 IPR013637 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00392 Trre-Chr10 2551953 2570033 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00392 37 92 JUMONJI Transcription Factor Family AT4G20400 48.333 2.64e-09 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre10g00392 PLU-1 4.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00392 K11446 - gmx:100789512 2993.76