Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre10g00392 | ATGGGAAAGGGTAAACCTAGGGCTGTTGAAAAAGGTGTAGTAGGTCCAAATCTTAGTGTTTCATCTCCGACTATACCATCGGCGCCGGTATATTATCCTACTGAAGATGAATTCAAAGATCCTTTAGATTTTATTCATAAGATTAGACATGAAGCTGAACCTTTTGGAATTTGTAGAATTGTTCCTCCTAACAATTGGAAACCCCCTTTTGCATTGGATCTAGATTCTTTTACTTTTCCTACTAAAACTCAGGCGATTCATAAGCTTCAGGTTCGTCCTGCTGCTTCTGTTTCCAAAACTTTTGAGTTGGAGTATTCTAGGTTTTTGAAGGATCATTGTAGTAAAAAGCTTAAGAAGAAGATTGTGTTTGAAGGTGAGGATTTGGATTTGTGTAAGTTGTTTAATGCTGTTAAACGGTTTGGGGGGTATGATAAGGTTGTTGATGGAAAGAAATGGGGTGATGTTGCTCGGTTTGTGAAATCTTCGGGGAAGATTTCCGATTGTGCTAAGCATGTTTTGTGTCAGTTGTATAGAGAGCATCTTTATGATTACGAGAATTTTTGTAATCGGATTAATAAAGGAACAAATGGGAATTGTTGTAAGAAAAGTGTACAAGAGGATAGAAAGAGTGATCATGGGGTACAAACTTCGGTCAGTTCGGCGTCCAAGAAGCATCATGGGGTTGTAGATGGTTTAAAAGGTAAGGATAAGAAAGCAAGGGAAGAAAACCGTGATCAGATTTGTGAGCAATGTAAAAGTGGGCTGCACGGGGATGTGATGCTTTTGTGTGATAGGTGTGATAAAGGATGGCATATTTATTGTCTTTCACCGCCGTTGAAGCAAATTCCGCTGGGAAACTGGTATTGTTTCAACTGTTTGAGTTCTGATAGGGAGAGCTTTGGTTTTGTGCCTGGGAAGAAGTATTCGTTGGAAACATTTAAACGCACTGCGGATAGGTCGAGGAGGAGGTGGTTTGGTCAGGGACCTGTTTCAAGGGTGCAAATAGAGAAAAAATTCTGGGAGATTGTGGAGGGGTCGGTTGGTGCGGTCGAGGTAATGTATGGAAATGACTTGGATACGTCTCTCTATGGGAGTGGTTTCCCAAATGAAACTAATCAGAAACCACAATCTATTGATGACAAGTTATGGCAAGAATACTCTACTAACCCATGGAATCTGAATAACTTGCCTAAGTTGAAAGGCTCAATGCTTCGAGCTGTTCATCACAATATCACTGGTGTTATGGTACCGTGGCTGTATATTGGAATGTTATTCTCATCCTTTTGCTGGCATTTTGAGGATCACTGCTTTTATTCAATGAATTATCTACACTGGGGAGAGCCAAAGTGCTGGTACAGTGTTCCTGGTAGTCAAGCCAGGGCATTTGAGAAGGTGATGAGAAGCAGCCTTCCCGACCTTTTCGATGCACAACCTGATCTGCTTTTTCAGCTTGTTACCATGTTAAACCCATCCGTCTTGCAAGAACATGGAGTTCCTGTCTTCAGCACACTTCAGGAGCCTGGAAATTTTGTTATTACTTTCCCCAGATCTTACCATGGTGGTTTCAATCTTGGTCTGAATTGTGCAGAGGCAGTCAATTTTGCTCCAGCTGACTGGCTACCACACGGTACATTTGGAGCTGATCTCTATAAGCGGTTTCACAAAACAGCTGTCTTGTCTCATGAGGAGCTTCTTTGTGTAGTAGCCCAGTATGGTGATGTTGATGGCAGAGGGTCATCTTATTTGAAAGCGGAATTGTTGACAATAATTGATAGAGAAAAATCCTGGAGGGAGAAACTTTGGAAAAATGGAATAGTTAAATCTTCTCGTTTTGCTCCTCGGAAATGTCCCCAATACGTAGGAACTGAAGAGGATCCTGCATGCATTATTTGCCAGCAATATCTCTATTTCTCTGCAGTTGTATGCAGTTGCCGGCCATCATCTTTTGTGTGCCTGGAGCACTGGGAACACCTTTGTGAGTGCAAAACTTCTAAACTTCGTCTTCTCTATCGTCATTCACTTGGTGAATTGTATGACTTGGCATTTTCTATTGACAACGATACTTCTGAAGATAAAGCTGAGAGTAGAAGTGTAAAAAGGCAGTCTTCATGTCTGAGTGCTTTGACAAAAAAGGTGAAAGGAAGCTCCATTACTTTCACTCAACTTGCTACAGAATGGCTTCTGCAATCTAGTACTATTCTTCAGAACGTTTTTGTGACTGATGCGTCTGCTACCGCACTAAGGAAAGCTGAACAGTTTCTTTGGGCTGGTTCCGAGATGGATTCCGTTCGGGATATGGTAGAGAGTTTGACTGAAGCTCAGAAATGGGCAGAAGGGGTAAAAGATTGTGTGACAAAAATTGAGTCATGGTTGAATCATCAGGACTTAAGTTTAAAGAAAGTTCATTTAGAATATGTTGATGAGTTACTGAGATTTGACCCTGTACCATGCAATGAGCCTCATTATCATAAATTGAAGGAATATGCAGAAGAAGCAAGGATGTTAGTTCAGGAGATTGAAGCTGCTTTGTCAATGTGTTCCAATATGTCTGAGTTGGAACTTTTATACTCCAGAGCTTGTGGCTTACCCATCTACATGAAAGAGACTAAAAAATTAGAAGGGAAAATTTCTTCAACCAAGGCATGGATGGGTAGTGTCAGAAACTGCATCTCAGCTAGCGATCCTGCTGAATTAGATGTTGATGTTCTTTACAAGTTAACGTCAGAGATTGCGGATCTTCAAGTTCAACTCCCAGAGATAGATGCACTTCAGAATCTAATAAATCAGGCAGAATCTTGTAGTTCTCAATGTCGTTGTATATTAGAAGGTCCTATGAATCTCAAGAATGTTGGTTTGCTGCTTAAAGAATGGGACAGTTTTACAGTTGATGTACCGGACTTGAGGCTACTAAGGAATTACCATTCAGATGCTGTGTCATGGGTTTCTCACTTTAACGATGTTTTAGAGAGAGTTCACAGACAGGAAGATCAACATAATGCATTTGATGAACTGAAGAGCATTCTTGAAGAAGGTTTATCTTTGAAAATTCAAGTTGATGAGTTGCCTCTAGTTGAGATTGAGCTGAAGAAGGCTAATTGCCGACAGAAAGCTTCGAAGGCACATGATTCAAAGATGCCCCCGGAATTCATTCAGCAACTGCTGAAGGAGGCCACTATGCTAGGAATTGAGGGAGAGAAGCAATTCACCAGTTTATCTTGTGTGCTTGGTGTCGCCATGCGTTGGGAGGAAAGGGCAGGAGAGATTCTTTCACTTGAGGCTTCTATTTCTGACTTTGAGGACATGATAAGAGCTTCGGAAAATATATTTATTATTCTTGCTTCACTTAATGATGTCAAAGAAGCATTATCGGAAGCTAATTCCTGGTTAAGGAATTCAAAGCCATATTTAGTCTCTTCTAATTGTGTGTCAAACTCTGTGCGGAAAGTTGAGGACTTGCAGTTGTTGGTTTCTCAATCAAAGCATCTTAAAGTATCTTTGGAAGAAAGAAGGATGCTTGAATTAGTTTTGAATAACTGCAAAAAATGGGAGTGTGAAGCACATTCTCTACTTGATGATGCTCAGTGCTTATTTGAATTGGATAACACTGTTCATGGAATAAGCAGTGATTTATTGTTTGAAGTGGAAGATTTGATTGCAAGAATCCAGTCTGCCATATCATCTGGTGTATCTCTTGGTTTTGACTTCAGTGATATTTCAAAACTTCAAGCATCTTGTTCTACACTGCAGTGGTGCAAAAGAGCCCTATGTTTCTGCAACCATTCTCCTTCCTTAGAGGATGTTTTGGAAGTTGTGGAAGGCCTCTCTCATTCCTCTGTTTCTGGTGCTCTATTGAATGTACTGATTGATGCGGTTGAGTGGCTTAGGAGAGCGTTAGAGGGGATATCTAGACCTTGCAATTCTAGAAGATGCAAATTGACTGATATTGAAGATATTCTTACTGATTATCGGACTATTAAAATGACCTTTACGGAAGTAAATTGTCAACTTGAAGAAGCCATTGGAAAACATAGGTTGTGGCAAGAACAAGTGGATAAATTTAATAGACTAAGTTCTAGGGAACGAACTTGGTCATCAATATTGCAGCTCAAGGAACTGGGGGATTCCATTGCCTTTCGTTGTCCGGAACTTGATTTAATATCATCTGAAGTCGAGAAGGTGGAAAATTGGAAGAAAAGATGCATGGATAATATTGGACCTTTATTCCAAAATGAAAATTCACTTCTTCATGCACTGCAGAAGATAAATCAGACTCTAGATAGATCACTATACATATATGGCAAGTTACAAATTCGGAAGGAGCCAAACCTATGTAACTGCTGCTTCGTTGATTCTGAAGATCAGGAATCTCTTATTTGTTCCACTTGTATGGACCGCTATCACTTGCAGTGCATTGGACTAACAGCAAAAGACACTGGCCTTGGAGACTATAAGTGCTCTTACTGTGAAATTTTGAAGGGTAAATCACAGTATTCAAATGGAAGTTCCCTCCTGAGGTTTGAGAAGCATATTGAATTGAACATTCTTGTCGAACTTCTGTCTGATGCTGAACATTTCTTTTTCTGGGTTGACGAAAGAGATCTTCTGAAACAACTTATTGAGAAAGCTTTTGCATGCAAATCTGGCTTGAGAGAAATAGTGAACCTTTCATCAGCTTATGTCAATGAAGATATTTCCATCATCTCTGAAAAATTGACCATTGCTATAAAGGCTAGCAAAGTGGCTGGTGTCTATGATCAGGGTGGGAATTGTGACCTTGAGCTGGCTTTAGCAAGATACTTGTGGAAAATTCAAGTAAATATATTGTTAAGTGGTGAACAAAAGCCCACTGTTGAACAGATTCAGAAACATCTGAAAGAGGGAATGTCTATGGAAATATCCCCCAAAGATCACTATATGCTGAAACTTACAAATGTGAATTGTTTGGGCTTGCACTGGGTAGAACTAGCCAAAAAGGTATCAAATGATTCTGGAGCACTCGGCCTAGATAAAGTATATGAACTTGTAGTGGAAGGCGAAAACTTGCCTGTTGATGTAAATGAGGAACTCAGGATGTTAAGAGCTCGATGCATGCTATATTGCATTTGTCGAAAGCCCTTTGATCCCGGAAGGATGATTGCATGTTATCAATGTAATGAGTGGTATCACTTTGATTGTATGAAATTATCATGCACTCAAGATATCTACATTTGCCCTGCGTGTACCCCATGTACAGGATTGCCTACTAACCATGACAGATTAACTACTGGGAAACTTGAGGAGCCTAAAACACCTTCTCCCAGGCATACAAACCCTAGAAAGAAACAGAAGAGAGACATGTTTGCACCCAGGAATGAAGATGGTAGTGATTTTAGGTATTCAAATGGGACAAAATGTCTAAGATGGAAAAATCGAAAACCATTTAGAAGAGTAACTAAAAGACGTCTTGAACTTCAAAGTCTTTCTCCATTTCTATGCATACAACGATAA | 5487 | 0.4002 | MGKGKPRAVEKGVVGPNLSVSSPTIPSAPVYYPTEDEFKDPLDFIHKIRHEAEPFGICRIVPPNNWKPPFALDLDSFTFPTKTQAIHKLQVRPAASVSKTFELEYSRFLKDHCSKKLKKKIVFEGEDLDLCKLFNAVKRFGGYDKVVDGKKWGDVARFVKSSGKISDCAKHVLCQLYREHLYDYENFCNRINKGTNGNCCKKSVQEDRKSDHGVQTSVSSASKKHHGVVDGLKGKDKKAREENRDQICEQCKSGLHGDVMLLCDRCDKGWHIYCLSPPLKQIPLGNWYCFNCLSSDRESFGFVPGKKYSLETFKRTADRSRRRWFGQGPVSRVQIEKKFWEIVEGSVGAVEVMYGNDLDTSLYGSGFPNETNQKPQSIDDKLWQEYSTNPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGSQARAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQEHGVPVFSTLQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPHGTFGADLYKRFHKTAVLSHEELLCVVAQYGDVDGRGSSYLKAELLTIIDREKSWREKLWKNGIVKSSRFAPRKCPQYVGTEEDPACIICQQYLYFSAVVCSCRPSSFVCLEHWEHLCECKTSKLRLLYRHSLGELYDLAFSIDNDTSEDKAESRSVKRQSSCLSALTKKVKGSSITFTQLATEWLLQSSTILQNVFVTDASATALRKAEQFLWAGSEMDSVRDMVESLTEAQKWAEGVKDCVTKIESWLNHQDLSLKKVHLEYVDELLRFDPVPCNEPHYHKLKEYAEEARMLVQEIEAALSMCSNMSELELLYSRACGLPIYMKETKKLEGKISSTKAWMGSVRNCISASDPAELDVDVLYKLTSEIADLQVQLPEIDALQNLINQAESCSSQCRCILEGPMNLKNVGLLLKEWDSFTVDVPDLRLLRNYHSDAVSWVSHFNDVLERVHRQEDQHNAFDELKSILEEGLSLKIQVDELPLVEIELKKANCRQKASKAHDSKMPPEFIQQLLKEATMLGIEGEKQFTSLSCVLGVAMRWEERAGEILSLEASISDFEDMIRASENIFIILASLNDVKEALSEANSWLRNSKPYLVSSNCVSNSVRKVEDLQLLVSQSKHLKVSLEERRMLELVLNNCKKWECEAHSLLDDAQCLFELDNTVHGISSDLLFEVEDLIARIQSAISSGVSLGFDFSDISKLQASCSTLQWCKRALCFCNHSPSLEDVLEVVEGLSHSSVSGALLNVLIDAVEWLRRALEGISRPCNSRRCKLTDIEDILTDYRTIKMTFTEVNCQLEEAIGKHRLWQEQVDKFNRLSSRERTWSSILQLKELGDSIAFRCPELDLISSEVEKVENWKKRCMDNIGPLFQNENSLLHALQKINQTLDRSLYIYGKLQIRKEPNLCNCCFVDSEDQESLICSTCMDRYHLQCIGLTAKDTGLGDYKCSYCEILKGKSQYSNGSSLLRFEKHIELNILVELLSDAEHFFFWVDERDLLKQLIEKAFACKSGLREIVNLSSAYVNEDISIISEKLTIAIKASKVAGVYDQGGNCDLELALARYLWKIQVNILLSGEQKPTVEQIQKHLKEGMSMEISPKDHYMLKLTNVNCLGLHWVELAKKVSNDSGALGLDKVYELVVEGENLPVDVNEELRMLRARCMLYCICRKPFDPGRMIACYQCNEWYHFDCMKLSCTQDIYICPACTPCTGLPTNHDRLTTGKLEEPKTPSPRHTNPRKKQKRDMFAPRNEDGSDFRYSNGTKCLRWKNRKPFRRVTKRRLELQSLSPFLCIQR | 1828 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre10g00392 | 1828 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1685 | 1742 | IPR013083 | - | |
Trre10g00392 | 1828 | Coils | Coil | 825 | 845 | - | - | |
Trre10g00392 | 1828 | MobiDBLite | consensus disorder prediction | 210 | 236 | - | - | |
Trre10g00392 | 1828 | ProSitePatterns | Zinc finger PHD-type signature. | 1700 | 1740 | IPR019786 | - | |
Trre10g00392 | 1828 | PANTHER | LYSINE-SPECIFIC DEMETHYLASE | 23 | 1083 | - | - | |
Trre10g00392 | 1828 | SMART | bright_3 | 96 | 190 | IPR001606 | GO:0003677 | |
Trre10g00392 | 1828 | SMART | PHD_3 | 1699 | 1741 | IPR001965 | - | |
Trre10g00392 | 1828 | SMART | PHD_3 | 247 | 293 | IPR001965 | - | |
Trre10g00392 | 1828 | SMART | PHD_3 | 1443 | 1489 | IPR001965 | - | |
Trre10g00392 | 1828 | Gene3D | Cupin | 28 | 536 | - | - | |
Trre10g00392 | 1828 | SMART | JmjN_1 | 27 | 68 | IPR003349 | - | |
Trre10g00392 | 1828 | SUPERFAMILY | FYVE/PHD zinc finger | 241 | 295 | IPR011011 | - | |
Trre10g00392 | 1828 | CDD | PHD_RSF1 | 248 | 292 | - | - | |
Trre10g00392 | 1828 | SUPERFAMILY | ARID-like | 75 | 192 | IPR036431 | GO:0003677 | |
Trre10g00392 | 1828 | Gene3D | - | 81 | 186 | IPR036431 | GO:0003677 | |
Trre10g00392 | 1828 | ProSiteProfiles | ARID domain profile. | 95 | 189 | IPR001606 | GO:0003677 | |
Trre10g00392 | 1828 | SUPERFAMILY | FYVE/PHD zinc finger | 1694 | 1747 | IPR011011 | - | |
Trre10g00392 | 1828 | SMART | ARID_2 | 95 | 185 | - | - | |
Trre10g00392 | 1828 | FunFam | Transcription factor jumonji (JmjC) domain-containing protein | 14 | 118 | - | - | |
Trre10g00392 | 1828 | Pfam | ARID/BRIGHT DNA binding domain | 103 | 185 | IPR001606 | GO:0003677 | |
Trre10g00392 | 1828 | Pfam | PHD-finger | 247 | 294 | IPR019787 | - | |
Trre10g00392 | 1828 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 250 | 295 | IPR013083 | - | |
Trre10g00392 | 1828 | CDD | ARID | 99 | 185 | - | - | |
Trre10g00392 | 1828 | ProSiteProfiles | JmjN domain profile. | 28 | 69 | IPR003349 | - | |
Trre10g00392 | 1828 | ProSiteProfiles | Zinc finger PHD-type profile. | 245 | 295 | IPR019787 | - | |
Trre10g00392 | 1828 | MobiDBLite | consensus disorder prediction | 1754 | 1791 | - | - | |
Trre10g00392 | 1828 | Pfam | jmjN domain | 29 | 62 | IPR003349 | - | |
Trre10g00392 | 1828 | ProSitePatterns | Zinc finger PHD-type signature. | 248 | 292 | IPR019786 | - | |
Trre10g00392 | 1828 | Pfam | JmjC domain, hydroxylase | 418 | 534 | IPR003347 | - | |
Trre10g00392 | 1828 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1385 | 1492 | IPR013083 | - | |
Trre10g00392 | 1828 | ProSiteProfiles | JmjC domain profile. | 385 | 551 | IPR003347 | - | |
Trre10g00392 | 1828 | SUPERFAMILY | Clavaminate synthase-like | 378 | 566 | - | - | |
Trre10g00392 | 1828 | SMART | cupin_9 | 385 | 551 | IPR003347 | - | |
Trre10g00392 | 1828 | Pfam | C5HC2 zinc finger | 628 | 679 | IPR004198 | - | |
Trre10g00392 | 1828 | SUPERFAMILY | FYVE/PHD zinc finger | 1440 | 1490 | IPR011011 | - | |
Trre10g00392 | 1828 | Pfam | PLU-1-like protein | 946 | 1189 | IPR013637 | - | |
Trre10g00392 | 1828 | Pfam | PLU-1-like protein | 894 | 987 | IPR013637 | - | |
Trre10g00392 | 1828 | Pfam | PLU-1-like protein | 1145 | 1418 | IPR013637 | - | |
Trre10g00392 | 1828 | Pfam | PLU-1-like protein | 725 | 885 | IPR013637 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre10g00392 | Trre-Chr10 | 2551953 | 2570033 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre10g00392 | 37 | 92 | JUMONJI Transcription Factor Family | AT4G20400 | 48.333 | 2.64e-09 | 60.5 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | ARID | Trre10g00392 | PLU-1 | 4.9e-16 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre10g00392 | K11446 | - | gmx:100789512 | 2993.76 |