Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00381 ATGTCTTCTAATGATATCTATAATGTTGATATTTCTTTCAAACAACATTATTCAACCACAGACATAATCTCTTCTTATGATCCTTCTAATTTCCTTGATGATTTTAACAATTCTTTCTTCTCTTCTTTTTCTCCCCCAAATGGCACCAACAATGAGCTTGAAACTTGCCATAGCACACTCATGGATTCTCCAAATTTTCAACTGTGTGAATTGAGCTCACCCGAAAATAATTTCTTCTCCGGACAAACGAGAAGAGCGTCTAGCGTCGGAGGTTTGCAGATCATGAAAGCAACTAACAACCATGGGTCTCAAATGGAGGAATCAAACTTCTCTAAAGTAGGGCGTTACAGTATGGAAGAGAGAAAAGAAAAAATCTCTAAATACAGAGCCAAGAGAAAACAGAGGAAGTTCAACAAGATTATTAAGTATGCATGCCGGAAGACACTAGCCGACAATCGGACACGCATACGTAGCAGATTTGCACGTAATGACAATGAAACTAATGACATTTCAAAAACAGAACAATATCACGAAGACGAGTTTTGGGTTGATCTCATTGAAGGGTTAAATGACGAGCACCTCTATTAG 588 0.3793 MSSNDIYNVDISFKQHYSTTDIISSYDPSNFLDDFNNSFFSSFSPPNGTNNELETCHSTLMDSPNFQLCELSSPENNFFSGQTRRASSVGGLQIMKATNNHGSQMEESNFSKVGRYSMEERKEKISKYRAKRKQRKFNKIIKYACRKTLADNRTRIRSRFARNDNETNDISKTEQYHEDEFWVDLIEGLNDEHLY 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00381 195 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 38 172 IPR045281 GO:0009909
Trre10g00381 195 ProSiteProfiles CCT domain profile. 121 163 IPR010402 GO:0005515
Trre10g00381 195 Pfam CCT motif 121 163 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00381 Trre-Chr10 2480807 2481861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00381 120 170 C2C2-CO-like Transcription Factor Family AT5G24930 50.943 1.18e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre10g00381 CCT 2.5e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00381 - - cam:101493593 197.593