Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre10g00380 | ATGGGATTTCCAACAGAGATTGTGTTGCCAAAGGTGTTTGTGCAGCTACTTTCTGTACTGTCTTTCATCAGAAAAATCATTGCAATCCTCTTCTTTTATATCGGTCTAAATTCCGAATTTCCTTTTTCAGAGACTATACCAGAATTTTCACCAGTGAATCCCCTTATTCTGATAAGAGAAATACTACCTGTGGTCAAGTTCTCGGAGCTGGCGGTCGTAGAATACTTGCCGGAGAGCTGCACTGTCTGTCTCAGCGAGTTTAAGGCCGAAGACGAGATCCAACGGCTTATAAACTGCCGTCATATCTTTCATCGGAATTGCATCGACCGTTGGATGGGATATGATCACATAACATGTCCTTTGTGTCGCACAATGATTCTACCTCATCATCATATGCAAGATGCATAA | 408 | 0.4216 | MGFPTEIVLPKVFVQLLSVLSFIRKIIAILFFYIGLNSEFPFSETIPEFSPVNPLILIREILPVVKFSELAVVEYLPESCTVCLSEFKAEDEIQRLINCRHIFHRNCIDRWMGYDHITCPLCRTMILPHHHMQDA | 135 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre10g00380 | 135 | Pfam | Ring finger domain | 79 | 123 | IPR001841 | - | |
| Trre10g00380 | 135 | ProSiteProfiles | Zinc finger RING-type profile. | 80 | 123 | IPR001841 | - | |
| Trre10g00380 | 135 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 58 | 128 | IPR013083 | - | |
| Trre10g00380 | 135 | SMART | ring_2 | 80 | 122 | IPR001841 | - | |
| Trre10g00380 | 135 | PANTHER | - | 3 | 131 | IPR044249 | - | |
| Trre10g00380 | 135 | SUPERFAMILY | RING/U-box | 58 | 130 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre10g00380 | Trre-Chr10 | 2477287 | 2477694 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre10g00380 | 1 | 130 | C3H Transcription Factor Family | AT1G63840 | 49.296 | 3.18e-39 | 128 |