Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00374 ATGATCATTTCAGAGAAGAACCGTAGAGAGATCTCCAAATACCTATTCCAAGAGGGAGTTTGCTATGCAAAGAAGGATTACAATTTGGCTAAGCATCCAGAGATTGATGTGCCAAATCTGCAAGTGATTAAGCTTATGCAGAGCTTCAAATCTAGAGAATATGTTAGGGAAACTTTTGCTTGGATGCACTATTACTGGTTTTTGACAAATGATGGAATTGAGTTCCTTAGGACTTATCTCAATCTTCCATCTGAGATTGTTCCAGCTACTTTGAAGAAGCAGGCTAAGCCAGCTGGAAGGCCATTTGGTGGTCCACCTGGTGATCGCCCTAGGGGCCCACCTAGATTTGAAGGTGAAAGAAGATTCGGTGGTGATCGTGATGGATACCGTGGAGGTCCCAGAGGACCTGGTGGTGAGTTTGGAGGAGAGAAGGGAGGAGCTCCAGCTGACTACAGACCTTCCTTTGGGGGTCCTGGAGGAAGACCTGGTTTCGGTCGTGGTTCTGGTGGTTTTGGAGCACCAACTAGTTCAAATGATGCTTAA 543 0.4604 MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGERRFGGDRDGYRGGPRGPGGEFGGEKGGAPADYRPSFGGPGGRPGFGRGSGGFGAPTSSNDA 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00374 180 PANTHER 40S RIBOSOMAL PROTEIN S10 1 173 IPR037447 -
Trre10g00374 180 MobiDBLite consensus disorder prediction 112 128 - -
Trre10g00374 180 FunFam 40S ribosomal protein S10 1 104 - -
Trre10g00374 180 Gene3D - 1 104 IPR036388 -
Trre10g00374 180 MobiDBLite consensus disorder prediction 91 180 - -
Trre10g00374 180 Pfam Plectin/S10 domain 3 94 IPR005326 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00374 Trre-Chr10 2435206 2436829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00374 1 155 Cytoplasmic Ribosomal Protein Gene Family AT5G52650 81.290 7.44e-74 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00374 K02947 - gmx:100500445 219.55