Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00373 ATGGGTCATCATTCATGCTGCAATCAACAGAAGGTTAAAAGAGGGCTTTGGTCACCTGAGGAAGATGAGAAACTCATCAGATATATTTCAACTCATGGTTATGGCTGTTGGAGTGAAGTTCCAGAAAAAGCTGGGCTTCAAAGGTGTGGTAAGAGTTGTAGGTTGAGATGGATTAATTATTTAAGACCTGATATTAGAAGAGGAAGGTTTACACCTGAGGAGGAGAAATTAATTATAAGCCTCCATGGTGTTGTTGGCAACAGATGGGCTCACATTGCTAGCCACTTGCCAGGTAGAACGGACAACGAAATAAAAAACTATTGGAATTCATGGATCAAAAAGAAAATCAGAAAGTCGTCTTCTTCCGCGTCTATTAATTCATCAATCAATGCACCAAGTGTTGATCATCATCATCATCATCATTCTCATTCTCAGTTCAATTACAATTCCAATCAACTAGATAATTATTTCACCAACCATGAAAATGTAACATCAACAAAAGAAACCTTATTTTCTTCAACATTTCCTTCATTTATGTTTGACACAAGTTCATTAAATGAAACAACATCAACAATAGACACCAATGTAATAAGACCAGAAGTATTATTCCATAATGATACTATGAGTTTGAGTTCTGACACATGGAACTTGAATCACCATGCGCTTCCTCCTCATCCTGCATCATCGGCTTTTACCGGAACCATTCATGATTATAATCTGCCACCATTGATAGAGAATAATGTGGAAAACATGGTGGCAATGCAATCTTGTACTAATATGGATCATGATGAAGGAAGGGAGATATTAACATTGGAATCAATGCAAAGACAAGAGTTGAATGAATGGGTGGAAAATCAACAACAACAATGTTCTACTCCTAACTTTATTTTCAGCTGGGAGAATGTTGAAAGACAAATTATTGAAGGTGATGATCAAGAACAAGTACTAGTACCAAACTCATTACCACATATGGGAACAATTAATTCATCACTTTCTCCTTTTCCTTCTTCATTATTATAA 1020 0.3608 MGHHSCCNQQKVKRGLWSPEEDEKLIRYISTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKSSSSASINSSINAPSVDHHHHHHSHSQFNYNSNQLDNYFTNHENVTSTKETLFSSTFPSFMFDTSSLNETTSTIDTNVIRPEVLFHNDTMSLSSDTWNLNHHALPPHPASSAFTGTIHDYNLPPLIENNVENMVAMQSCTNMDHDEGREILTLESMQRQELNEWVENQQQQCSTPNFIFSWENVERQIIEGDDQEQVLVPNSLPHMGTINSSLSPFPSSLL 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00373 339 FunFam Transcription factor MYB26 68 140 - -
Trre10g00373 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre10g00373 339 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre10g00373 339 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Trre10g00373 339 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre10g00373 339 Gene3D - 68 145 - -
Trre10g00373 339 CDD SANT 17 61 IPR001005 -
Trre10g00373 339 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre10g00373 339 FunFam MYB transcription factor 6 66 - -
Trre10g00373 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre10g00373 339 PANTHER MYB DOMAIN PROTEIN 55 1 288 - -
Trre10g00373 339 CDD SANT 69 111 IPR001005 -
Trre10g00373 339 Gene3D - 6 66 - -
Trre10g00373 339 MobiDBLite consensus disorder prediction 127 146 - -
Trre10g00373 339 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre10g00373 339 SMART sant 13 63 IPR001005 -
Trre10g00373 339 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00373 Trre-Chr10 2431138 2432895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00373 1 324 MYB Transcription Factor Family AT1G63910 49.046 3.18e-97 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre10g00373 Myb_DNA-binding 2.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00373 K09422 K02947 gmx:100797787 376.711