Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00366 ATGGCTCAAGAAATTGAGAACAAAGCCAAAGAAGCGTTTTTCGACGACGACTTCTCTCTCGCCGTTGATCTCTACTCTCAGGCTATCGATTTGGATCCTAACAACCCTAATCTCTTCGCCGATAGAGCACAAGCTTATATCAAACTCAACTCTTTCACTGAAGCTGTTTCCGATGCTAATAAGGCTATTCTGTTAAACCCTACTTTATCTAAAGCTTATCTTAGAAAAGGGACTGCTTGTTTTAATCTTGAAGAATATCATACTGCTAAGGTTGCACTTGAAAAGGGTGTTTCTTTTGCGCCTAATGATTCCAGATTTACTAATTTGATTCAACAATGTGAACGCCACATTGCTGCTGATAGTCTTGCTGGCATCCTACCACCAAATGGAACCAAAACATCTGTACCGCCTGTTGCTGCTGATACCCATATGTGTGATAAAAGTGATGGAACATCCAAAGAACCTCAAAGAAACATTCCTGCATCCCAAACTAATGAAGCTGCGCCAACCAGACCAAAATACAGACATGAATATTACCAGAAGCCAGAAGAAGTGGTTGTGACAATATTTGCAAAAGGAATACCAGCAGAAAATGTGGCTGTGGAGTTTGGTGAACAAATTCTGAGTGTTACCATTAATGTTCCTGGTCAAGATGCTTATCAATATCAACCTCGATTGTTTGGAAAGATAACACCTGATAAGTGCAAAGTTGTGGTGTTGTCAACCAAAATTGAAATACGTCTGGCAAAAGCTGAAGCTATTAACTGGACATCTCTGGAATATAGCAAGGATGTGGTTCCTCAAAAGATAAACGTGCCTACAATTCAATCTGAAAGGCCTGCATATCCATCATCAAAGTCGAGGACTAAGGATTGGGATAAGTTGGAAGCTGAAGTGAAAAAAGAGGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGTGATATTTACCAAAGTGCGGACGAGGACATGAGGAGAGCGATGAGCAAGTCTTTTCAAGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAAAGAAGGTGGAAGGAAGTCCTCCAGAAGGCATGGAGGTGAAGAAATGGGAATATTGA 1119 0.4066 MAQEIENKAKEAFFDDDFSLAVDLYSQAIDLDPNNPNLFADRAQAYIKLNSFTEAVSDANKAILLNPTLSKAYLRKGTACFNLEEYHTAKVALEKGVSFAPNDSRFTNLIQQCERHIAADSLAGILPPNGTKTSVPPVAADTHMCDKSDGTSKEPQRNIPASQTNEAAPTRPKYRHEYYQKPEEVVVTIFAKGIPAENVAVEFGEQILSVTINVPGQDAYQYQPRLFGKITPDKCKVVVLSTKIEIRLAKAEAINWTSLEYSKDVVPQKINVPTIQSERPAYPSSKSRTKDWDKLEAEVKKEEKEEKLDGDAALNKLFRDIYQSADEDMRRAMSKSFQESNGTVLSTDWKEVGSKKVEGSPPEGMEVKKWEY 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00366 372 Pfam CS domain 175 250 IPR007052 -
Trre10g00366 372 SUPERFAMILY TPR-like 2 114 IPR011990 GO:0005515
Trre10g00366 372 PANTHER PROTEIN SGT1 HOMOLOG 1 370 IPR044563 GO:0051087
Trre10g00366 372 MobiDBLite consensus disorder prediction 142 173 - -
Trre10g00366 372 Pfam Tetratricopeptide repeat 71 103 IPR019734 GO:0005515
Trre10g00366 372 SUPERFAMILY HSP20-like chaperones 165 268 IPR008978 -
Trre10g00366 372 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Trre10g00366 372 SMART tpr_5 2 35 IPR019734 GO:0005515
Trre10g00366 372 SMART tpr_5 70 103 IPR019734 GO:0005515
Trre10g00366 372 SMART tpr_5 36 69 IPR019734 GO:0005515
Trre10g00366 372 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Trre10g00366 372 Pfam Tetratricopeptide repeat 17 56 - -
Trre10g00366 372 Gene3D - 172 263 IPR008978 -
Trre10g00366 372 ProSiteProfiles CS domain profile. 171 260 IPR007052 -
Trre10g00366 372 CDD p23_CS_SGT1_like 177 260 - -
Trre10g00366 372 Pfam SGS domain 290 370 IPR007699 -
Trre10g00366 372 FunFam Protein SGT1 homolog A 169 273 - -
Trre10g00366 372 Gene3D Tetratricopeptide repeat domain 1 122 IPR011990 GO:0005515
Trre10g00366 372 MobiDBLite consensus disorder prediction 154 169 - -
Trre10g00366 372 MobiDBLite consensus disorder prediction 352 372 - -
Trre10g00366 372 ProSiteProfiles SGS domain profile. 281 372 IPR007699 -
Trre10g00366 372 FunFam Protein SGT1 homolog 1 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00366 Trre-Chr10 2392760 2396634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00366 1 100 U-box Gene Family AT3G07370 28.000 8.95e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00366 K12795 - gmx:100784022 532.717