Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00361 ATGAATGTATTGGTTTGCAGCGACTTGGAAATTGCTGCACCAGACCTTCGACATGCTGTCGAGTTTGGAGTTAAAAATTACAAGAAACATCATGCATTTGGAATTGTGCTCCAACACTTAGGAAACCTTGAGGAAGCGATTACTCAATTTGAAAAGGCTTATGATATTGTCAGATTCGACAATTCCACCACTGATTTGGTGGAAGGCTGTTGGAATACATTGGCTTACAGTAAATACTCTCTGTGGCAAAATTCTCTTGAACTTCAACAAAAGGAAGTCGATCGCTTAATGCAAGAGTTGGAGGAAGCAAATAATCCTTTAGGAAATGATGCTTACAGAGAGGTTCCACATTATCTTCAGTGTCCAATCAGCCGTGAGCTGTTTCGTGATCCGGTAATAGCTCCAAGTGGGGCATCATATGAAAGACGCGCTATCCTTGACTATATCCAGAAGGCTGCGCCGGGGAAGGCGATTGATCCGTCGACGAGGCTACCACTTCGAGAATGCCAGCTATATAGTAATCTTGCTCTTAGGGAAGCTGTTGATGATTTCCTTCACAGAAACTGGTGGGCCTACAAAGTAGATGGTTTACATGAAATTAATGATTGGACACTTTAG 618 0.4256 MNVLVCSDLEIAAPDLRHAVEFGVKNYKKHHAFGIVLQHLGNLEEAITQFEKAYDIVRFDNSTTDLVEGCWNTLAYSKYSLWQNSLELQQKEVDRLMQELEEANNPLGNDAYREVPHYLQCPISRELFRDPVIAPSGASYERRAILDYIQKAAPGKAIDPSTRLPLRECQLYSNLALREAVDDFLHRNWWAYKVDGLHEINDWTL 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00361 205 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 7 193 IPR045200 GO:0000209|GO:0061630
Trre10g00361 205 Pfam U-box domain 115 188 IPR003613 GO:0004842|GO:0016567
Trre10g00361 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 194 IPR013083 -
Trre10g00361 205 ProSiteProfiles U-box domain profile. 114 191 IPR003613 GO:0004842|GO:0016567
Trre10g00361 205 SUPERFAMILY TPR-like 9 60 IPR011990 GO:0005515
Trre10g00361 205 Gene3D Tetratricopeptide repeat domain 6 103 IPR011990 GO:0005515
Trre10g00361 205 SUPERFAMILY RING/U-box 110 191 - -
Trre10g00361 205 Coils Coil 79 106 - -
Trre10g00361 205 SMART Ubox_2 118 184 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00361 Trre-Chr10 2349117 2352952 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00361 15 194 U-box Gene Family AT3G07370 31.776 5.33e-28 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00361 K09561 - rcu:8273681 124.405