Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00357 ATGGAACAGAAAGGAATGCTAATATCTGCCTGTGTTGGGGTCGGAGTTGGAGTCGGCCTTGGTTTGGCTTCTGGACAAACCAAATGGGGGCCTAATTCTGTCTCCTCAACCGCCATCACACCCGAAAAAATTGAACACGAAATGCTTCGACTTATTGTTGATGGCAGAGAAAGCAATGTCACTTTTGATAATTTCCCTTATTATCTCAGTGAACAGACACGGGTGTTGCTGACAAGTGCTGCCTATGTCCATTTAAAGCATGCGGAGGTTTCTAAATATACACGGAATCTTGCTCCTGCAAGCCGGACTATTCTGCTCTCAGGGCCAGCCGAACTTTACCAACAGGTTCTTGCCAAGGCTTTAGCTCACTACTTTGAGGCTAAGTTGCTTCTGTTCGATGTAACTGACTTTTCATTGAAGATTCAAAGTAGATATGGTTCTTCCAACTTAGAAAATTCTTTAAAAAGGTCTACTTCAGAGACAACCTTGGCTCGGTTATCTGACCTATTCGGGTCATTTTCATTCTTTCCACAAAGAGAAGATAATAAAGGCAAAATCCGCAGGCAAAGCAGTGGCGTAGACCTTCGACGGATGGATACTGAAGGATCATGTAATACTTCTAAGCTTCGTAGGAATGCATCAGCCTCTGGAAATATTAGCAGTCTTGGTTTGCAAAGCAATCCTACAAACTCAGCTTCTGGGAAGCACATAGTCAGCTGGTCTTTTGATGAAAAGCTTCTTATACAGACTATTTACAAGGTTTTAGTTTATGTGTCAAAAACCTACCCCATTGTACTATACCTGCGGGATGTTGATAAGTTGTTGGGTAGATCACAAAGGATATGTAAACTGTTCCAGACAATGTTAACAAAATTATCTGGACAAATTTTGATTCTTGGTTCAAGGGTTGTGGATTCTAGTAATGACTGCAATGAAGTAGATGATATGCTTACCTCCCTCTTCCCTTACGACATAGAAATCAAACCACCGGAAGATGAATCCCATCTGGTCAGCTGGAAGTCTCAATTTGAAGCGGATATGAAGAAGATACAGATTCAAGACAACAAGAACCATATCATGGAAGTGCTTGCAGCCAATGATCTTGATTGTCATGACCTGGATTCCATCCGTGTAGAAGACGCAATGGTTCTCAGTAACTCTATAGAAGAGGTTGTCGTATCAGCGATTTCTTATCATTTAATGAATAGCAAAGAGCCTGAATACAGAAATGGGAAACTAGTTATTCCGTGCAATAGTTTGTCCCATGCTCTGGGTATATTCCAGGAGGGAAAACTCAGTGGAAGAGATACAATGAAATTAGAAGCTCAAGCAGTAACAGCTGAGCAGAGAGAAGAAGGAGCTGTTGTGAAACCAGAAGGAACGTCTGAAAGTTCTGCTCCTGGTATAAAGACTGAAGCAGAAATACCAACTTCGGCGGCCAGAACTGACGGTGAAAATTCAGTTCCTGCCCCCAAAGCTGAAGTTCCTGACAATGAGTTTGAGAAGCGGATAAGGCCTGAAGTAATACCAGCAAATGAAATTGGGGTAACATTCTCCGATATTGGTGCCTTAGAAGAGACTAAAGAGTCACTTCAAGAACTAGTAATGCTTCCCCTTCGAAGGCCAGACCTTTTTGATGGAGGCCTTCTAAAGCCTTGTAGAGGAATATTGCTATTTGGGCCACCTGGCACAGGAAAAACAATGTTGGCAAAGGCCATTGCAAACGAGGCTGGAGCAAGTTTCATTAACGTATCCATGTCTACCATCACCTCTAAATGGTTTGGTGAAGACGAGAAGAATGTTCGTGCTTTATTCACACTAGCAGCCAAGGTCTCCCCAACTATTATATTTGTTGATGAGGTGGATAGTATGCTTGGCCAGCGGACAAGAGTTGGGGAACATGAAGCCATGCGGAAAATAAAAAATGAATTTATGACCAATTGGGATGGACTTACCTCAAAACCATCGGACCGCATCCTTGTCCTCGCTGCAACTAATAGGCCCTTTGACCTGGATGAAGCAATTATTAGACGATTTGAAAGGAGGATTATGGTTGGGCTACCATCTGCGGAGAACAGGGAAAATATATTAAGGACCCTTTTGGCTAAAGAGAAGGTGGATGATGGACTTGATTTTAAGGAACTTGCAACTATGACAGAAGGATACAGTGGAAGTGATCTAAAGAACATATGCACAACTGCTGCTTATAGGCCTGTTAGAGAGTTAATTCAGCAAGAGATAAAAAAGGATTCGGAGAAAAAGAAGAAAGAAGCTGAAGGACAGGATGCTCAGGATGTAGAAGAAGTTGAACAGGAAAGAGTCATTAGCCTTAGACCTTTGAATATGCAGGACTTCAAAGTGGCAAAGAGTCAGGTTGCCGCAAGCTTTGCATCCGAGGGGGCTGGAATGAATGAGTTGAAGCAGTGGAATGACTTGTATGGAGAAGGTGGTTCGAGGAAGAAAGAACAACTATCTTATTTCCTATGA 2487 0.4246 MEQKGMLISACVGVGVGVGLGLASGQTKWGPNSVSSTAITPEKIEHEMLRLIVDGRESNVTFDNFPYYLSEQTRVLLTSAAYVHLKHAEVSKYTRNLAPASRTILLSGPAELYQQVLAKALAHYFEAKLLLFDVTDFSLKIQSRYGSSNLENSLKRSTSETTLARLSDLFGSFSFFPQREDNKGKIRRQSSGVDLRRMDTEGSCNTSKLRRNASASGNISSLGLQSNPTNSASGKHIVSWSFDEKLLIQTIYKVLVYVSKTYPIVLYLRDVDKLLGRSQRICKLFQTMLTKLSGQILILGSRVVDSSNDCNEVDDMLTSLFPYDIEIKPPEDESHLVSWKSQFEADMKKIQIQDNKNHIMEVLAANDLDCHDLDSIRVEDAMVLSNSIEEVVVSAISYHLMNSKEPEYRNGKLVIPCNSLSHALGIFQEGKLSGRDTMKLEAQAVTAEQREEGAVVKPEGTSESSAPGIKTEAEIPTSAARTDGENSVPAPKAEVPDNEFEKRIRPEVIPANEIGVTFSDIGALEETKESLQELVMLPLRRPDLFDGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTNWDGLTSKPSDRILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENRENILRTLLAKEKVDDGLDFKELATMTEGYSGSDLKNICTTAAYRPVRELIQQEIKKDSEKKKKEAEGQDAQDVEEVEQERVISLRPLNMQDFKVAKSQVAASFASEGAGMNELKQWNDLYGEGGSRKKEQLSYFL 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00357 828 ProSitePatterns AAA-protein family signature. 659 678 IPR003960 GO:0005524|GO:0016887
Trre10g00357 828 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 43 827 - -
Trre10g00357 828 Gene3D - 688 790 - -
Trre10g00357 828 Pfam AAA+ lid domain 710 751 IPR041569 -
Trre10g00357 828 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 516 755 IPR027417 -
Trre10g00357 828 MobiDBLite consensus disorder prediction 474 498 - -
Trre10g00357 828 Gene3D - 515 797 IPR027417 -
Trre10g00357 828 MobiDBLite consensus disorder prediction 748 770 - -
Trre10g00357 828 SMART AAA_5 100 331 IPR003593 GO:0016887
Trre10g00357 828 SMART AAA_5 552 689 IPR003593 GO:0016887
Trre10g00357 828 MobiDBLite consensus disorder prediction 449 468 - -
Trre10g00357 828 Pfam ATPase family associated with various cellular activities (AAA) 556 686 IPR003959 GO:0005524|GO:0016887
Trre10g00357 828 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 515 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00357 Trre-Chr10 2286777 2292420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00357 516 746 Calmodulin-binding Proteins AT3G56690 38.462 8.81e-42 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00357 - - gmx:100808011 1261.9