Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00356 ATGGGTAATCGCATCAGTTCCAAATTCTCTTCCAATAACCAAAACCATTCAAAACAACAACAACAACAACAACAAACTCCACATTCAAAATCAGAACCCTCACATCCCACTCCATCTTCCGTCCACAATCAACCCTCCCACTCCTCCTCCCACAACTCCTCCTCCTCCTCCTCCGCCGCTGTCGGCCGTGTCTTAGGCAAACCCATGGAAGACGTCCGATCTACCTATACCTTCGGCCGTGAACTAGGTCGTGGTCAATTCGGAGTTACATATCTAGTAACTCACAAAATCACCAAAGAACAATTCGCCTGCAAATCGATCGCGACGAGGAAGCTTATTCGTCGCGATGATTTGGATGATATTCGCCGTGAAGTTCAGATCATGCACCATCTCACCGGTCACCGGAATATTGTTGAGCTTAAAGGTGCTTATGAGGATCGTCATTCAGTTAATCTTATCATGGAGCTTTGTGCTGGTGGTGAACTCTTTGATCGGATTATATCTAAAGGTCATTACTCCGAGCGTGCTGCTGCTGAATTGTGTCGCCAGATGGTCGCTGTTGTTCATAATTGTCACACTATGGGTGTTATGCATAGGGATTTGAAGCCGGAGAATTTCTTGTTTCTTAGTAAGCATGAGAATTCGCCGCTTAAAACCACCGATTTCGGTCTCTCCGTGTTTTTCAAGCCAGGAGATGTATTTAAAGATCTTGTTGGAAGTGCATATTATGTTGCTCCTGAGGTGTTGCGTAGAAGTTATGGACCCGAAGCTGATATTTGGAGTGCTGGGATCATTTTGTATATTCTCCTCTCTGGTGTTCCTCCCTTCTGGGCAGAAAATGAAAAGGGTATCTTTGATGCTATTCTTCATGGACATATTGATTTCGCATCCGATCCCTGGCCTAAAATATCAAGTAGTGCTAAAGATCTGATCAAGAAGATGTTGCAAGGTGACCCTAAAGAACGGATTTCGGCTGTTGAAGTTCTTAATCATCCTTGGATGAAAGAAGATGGAGCATCCGATAAGCCTCTTGATATTGCTGTTTTGACCAGAATGAAACAATTCAGGGCAATGAACAAGCTAAAGAAAGTAGCTCTGAAGGTCATTGCTGAAAATCTTTCTGAAGAAGAAATTATTGGCTTGAAGGAAATGTTCAAATCCATGGACACAGATAACAGTGGAACAATCACTTTTGAAGAGTTGAAAGCTGGCCTCCCCAAACTAGGCACCAAGATTTCTGAGTCTGAAGTAAGGCAGCTGATGGAAGCGGCTGATGTTGATGGAAATGGAACCATTGATTATATCGAATTTATAACAGCTACCATGCACTTGAATAGAATGGAAAGAGAGGACCACCTGTTCAAAGCTTTTGAATATTTTGACAAGGACAAAAGCGGGTACATTACAAAGGAAGAGTTGGAATCTGCCCTTACAAAGTATAACATGGGTGATGAGAAAACAATAAAGGAGATCATTGCCGAAGTTGATTCAGATAATGATGGAAGAATTAACTATGAAGAGTTTGTAGCCATGATGAGGAGTGGCAACCCAGACTTGATAGCCAACAAGCGTCGCAAATAA 1581 0.4269 MGNRISSKFSSNNQNHSKQQQQQQQTPHSKSEPSHPTPSSVHNQPSHSSSHNSSSSSSAAVGRVLGKPMEDVRSTYTFGRELGRGQFGVTYLVTHKITKEQFACKSIATRKLIRRDDLDDIRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMELCAGGELFDRIISKGHYSERAAAELCRQMVAVVHNCHTMGVMHRDLKPENFLFLSKHENSPLKTTDFGLSVFFKPGDVFKDLVGSAYYVAPEVLRRSYGPEADIWSAGIILYILLSGVPPFWAENEKGIFDAILHGHIDFASDPWPKISSSAKDLIKKMLQGDPKERISAVEVLNHPWMKEDGASDKPLDIAVLTRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGTKISESEVRQLMEAADVDGNGTIDYIEFITATMHLNRMEREDHLFKAFEYFDKDKSGYITKEELESALTKYNMGDEKTIKEIIAEVDSDNDGRINYEEFVAMMRSGNPDLIANKRRK 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00356 526 Pfam EF-hand domain pair 381 441 IPR002048 GO:0005509
Trre10g00356 526 Pfam EF-hand domain pair 451 513 IPR002048 GO:0005509
Trre10g00356 526 Pfam Protein kinase domain 76 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00356 526 SUPERFAMILY EF-hand 372 512 IPR011992 -
Trre10g00356 526 FunFam Calcium-dependent protein kinase 1 78 161 - -
Trre10g00356 526 ProSitePatterns EF-hand calcium-binding domain. 425 437 IPR018247 -
Trre10g00356 526 FunFam Calcium-dependent protein kinase 1 341 516 - -
Trre10g00356 526 SMART efh_1 452 480 IPR002048 GO:0005509
Trre10g00356 526 SMART efh_1 380 408 IPR002048 GO:0005509
Trre10g00356 526 SMART efh_1 416 444 IPR002048 GO:0005509
Trre10g00356 526 SMART efh_1 487 515 IPR002048 GO:0005509
Trre10g00356 526 ProSitePatterns Protein kinases ATP-binding region signature. 82 105 IPR017441 GO:0005524
Trre10g00356 526 FunFam calcium-dependent protein kinase 1 162 341 - -
Trre10g00356 526 MobiDBLite consensus disorder prediction 1 61 - -
Trre10g00356 526 ProSiteProfiles Protein kinase domain profile. 76 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00356 526 PANTHER SERINE/THREONINE-PROTEIN KINASE 57 508 - -
Trre10g00356 526 CDD STKc_CAMK 76 333 - -
Trre10g00356 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Trre10g00356 526 ProSitePatterns EF-hand calcium-binding domain. 496 508 IPR018247 -
Trre10g00356 526 Gene3D Transferase(Phosphotransferase) domain 1 162 341 - -
Trre10g00356 526 SMART serkin_6 76 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00356 526 Gene3D - 342 515 - -
Trre10g00356 526 ProSiteProfiles EF-hand calcium-binding domain profile. 484 518 IPR002048 GO:0005509
Trre10g00356 526 ProSitePatterns EF-hand calcium-binding domain. 389 401 IPR018247 -
Trre10g00356 526 SUPERFAMILY Protein kinase-like (PK-like) 73 344 IPR011009 -
Trre10g00356 526 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509
Trre10g00356 526 MobiDBLite consensus disorder prediction 1 62 - -
Trre10g00356 526 ProSiteProfiles EF-hand calcium-binding domain profile. 448 483 IPR002048 GO:0005509
Trre10g00356 526 ProSitePatterns EF-hand calcium-binding domain. 461 473 IPR018247 -
Trre10g00356 526 Gene3D Phosphorylase Kinase; domain 1 78 161 - -
Trre10g00356 526 ProSiteProfiles EF-hand calcium-binding domain profile. 412 447 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00356 Trre-Chr10 2280278 2284682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00356 62 525 EF-hand Containing Proteins AT4G23650 80.000 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre10g00356 Pkinase 6.7e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00356 K13412 - gmx:100817321 861.292