Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00338 ATGGGTCATTTTCTGTTTTCATTTTACTTGATTGGTTTGTTAGTGTTTCAAGGAAATGCAGAACCTGTTGAAGATAAGAATGCATTGTTAGAATTTGTTGAAAAGTTACAACCTTTTAGGCCTTTGAATTGGAATTTGAGTTCATCAATTTGTACTAGTTGGAATGGTGTAACTTGTAGTCAAGATCAGTCTCAAATTATCGCGATTCGATTACCGGGAGTTGGATTTAATGGCACAATTCCTCCTAATACAATTAGTAGAATCAAAGGGTTGCAAAAATTGAGTCTTAGATCCAATTTTATAACTGGTCATTTTCCTTATGATTTTATCAATTTAAAGAATCTTTCTTTTCTTTATCTTCAATTCAATAATTTCATTGGTCCTTTGCCTGATTTTTCTGTTTGGAACAATCTTTCTGTTGTTAATTTGTCTAATAACCGTTTCATTGGCGAAATTCCTTTATCTCTTTCTAATTTGAGTCACCTTTCTTGTTTGAATCTTGCAAACAACTCGCTTTCGGGCGAAATTCCTAATATAAACTTACCTTTGTTGCAAAAATTGAATCTGTCTAACAATAATTTACAAGGGGTTGTTCCTGTTTCTCTTCAGAGGTTTCCTAAGTCAGCATTTATTGGAAACAATGTTTCTATTGGTGCATTTTCTCCGGTAACACTATCGTGTTCGAGACATTGTTCTAAATCTGAGAAATATGGAAGGATTGGTGGAACATTAGTGTTGGGAATTATTGTTGTTGGTTCTTTTATATGCTTTGCAGCATTGGTTGTTTTTATCTTTGTTTTGTGTTCTAAAAAGAAAAATGGAGATGCTTTTGTTGGCAAGATGGAAAAAGGAGGAAAAATGTCACCTGAAAAAGTGGTGTCAAGAAACCAAGATGCAAACAATAAGCTTTTTTTCTTTGAGGAATGTAACAACTATGCTTTTGATTTGGAGGATTTATTAAGGGCTTCTGCTGAGGTACTTGGTAAGGGAACATTTGGTGCTGCATACAAGGCGGTACTAGAGGATGCAACCACGGTTGTCGTCAAGAGGCTAAAAGAGGTAGCCGTTGGAAAGAAGGATTTCGAGCAACATATGAATATTGTTGGAAGTCTTAAACATGAGAATGTGGTTGAGCTAAAGGCATATTACTATTCCAAAGATGAGAAACTTGTTGTATATGACTACTACAGTCAGGGTAGCATCTCCGCTTTGTTGCACGGCAAAAGAGGAGAGGATAAGGTAGGTTTAGATTGGAATACTCGGATCAAAATAGTATTAGGTGCTGCACGAGGTCTTGCTCGTATCCATTCTGAGAACGGTGGGAAACTTGTACATGGCAATGTCAAATCCTCAAATATCTTTCTCAACACTAAACAGTTTGGTTGTGTATCTGATCTTGGCCTAGCGACCATAATGAGTTCAGTCACACAGCCTATCTCGCGAGCAGCTGGTTATCGAGCACCTGAAGTTACAGACACCAGGAAAGCAACACAGGCTTCAGATGTTTATAGCTTTGGTGTGGTGTTACTAGAGCTTCTAACCGGGAAATCTCCTATTCACACAACTAGAGGCGATGAGATTGTTCACCTTGTGAGATGGGTTCATTCAGTTGTGAGAGAGGAGTGGACTGCTGAAGTATTTGACATAGAGCTTATGAGATGTCCTAATATAGAAGAAGAAATGGTAGAGATGTTACAGATAGCCATGTCATGTGTTGCAAGGATGCATGATCAAAGACCTGCGATGTCAGAAATCGTAAAGATGATAGAAAATGTAAGGCAGATCGATATAGAGAATCAGCCATCATCCGAGAACCAAGCTGAAAATGCAACACAGCATAAAATCTCTCAACTTGATAGTCCACTCTCTAAAGAAGAAGGAGGTGAATAA 1890 0.3762 MGHFLFSFYLIGLLVFQGNAEPVEDKNALLEFVEKLQPFRPLNWNLSSSICTSWNGVTCSQDQSQIIAIRLPGVGFNGTIPPNTISRIKGLQKLSLRSNFITGHFPYDFINLKNLSFLYLQFNNFIGPLPDFSVWNNLSVVNLSNNRFIGEIPLSLSNLSHLSCLNLANNSLSGEIPNINLPLLQKLNLSNNNLQGVVPVSLQRFPKSAFIGNNVSIGAFSPVTLSCSRHCSKSEKYGRIGGTLVLGIIVVGSFICFAALVVFIFVLCSKKKNGDAFVGKMEKGGKMSPEKVVSRNQDANNKLFFFEECNNYAFDLEDLLRASAEVLGKGTFGAAYKAVLEDATTVVVKRLKEVAVGKKDFEQHMNIVGSLKHENVVELKAYYYSKDEKLVVYDYYSQGSISALLHGKRGEDKVGLDWNTRIKIVLGAARGLARIHSENGGKLVHGNVKSSNIFLNTKQFGCVSDLGLATIMSSVTQPISRAAGYRAPEVTDTRKATQASDVYSFGVVLLELLTGKSPIHTTRGDEIVHLVRWVHSVVREEWTAEVFDIELMRCPNIEEEMVEMLQIAMSCVARMHDQRPAMSEIVKMIENVRQIDIENQPSSENQAENATQHKISQLDSPLSKEEGGE 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00338 629 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 396 603 - -
Trre10g00338 629 SUPERFAMILY Protein kinase-like (PK-like) 325 600 IPR011009 -
Trre10g00338 629 SUPERFAMILY L domain-like 38 205 - -
Trre10g00338 629 Gene3D Phosphorylase Kinase; domain 1 286 395 - -
Trre10g00338 629 MobiDBLite consensus disorder prediction 600 629 - -
Trre10g00338 629 Gene3D Ribonuclease Inhibitor 135 225 IPR032675 -
Trre10g00338 629 ProSiteProfiles Protein kinase domain profile. 321 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00338 629 ProSitePatterns Protein kinases ATP-binding region signature. 327 358 IPR017441 GO:0005524
Trre10g00338 629 Pfam Protein kinase domain 324 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00338 629 PANTHER OS05G0588300 PROTEIN 8 603 - -
Trre10g00338 629 Gene3D Transferase(Phosphotransferase) domain 1 397 618 - -
Trre10g00338 629 FunFam pollen receptor-like kinase 1 289 395 - -
Trre10g00338 629 Gene3D Ribonuclease Inhibitor 24 134 IPR032675 -
Trre10g00338 629 Pfam Leucine rich repeat N-terminal domain 24 60 IPR013210 -
Trre10g00338 629 MobiDBLite consensus disorder prediction 600 618 - -
Trre10g00338 629 FunFam Probable inactive receptor kinase RLK902 22 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00338 Trre-Chr10 2198678 2200744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00338 14 613 Receptor kinase-like Gene Family AT4G23740 61.912 0.0 755
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre10g00338 Pkinase 1.5e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00338 - - gmx:100804799 849.736