Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00337 ATGACCAAGAAACACACTCACCGACTCAACCTTACCAAAGAAAACACACCAAAGGAACCATTTCCGAAAATAGTCAGAATAACTGTAACTGACAAAGACGCTACAGACTGTTCCAGCGACGAAGAAGAAGGTTTCAAGCATAACCGACCTAAGAAGTTTGTTAACGAGATTATCATAGAGCCATGCGTGAGTGAGAATAAAACCCGCGGCGGCGGTGGTGGAGGTAGTGCTGGTGGTGGTGTTTCTAGGAAGAGAAACAGAACAAACGGAGGAGGAGGAAAAGCAAGAGCTCCGGCAACTCGACAGGTTTACTCAGGGAAGAAATATAGAGGAGTTAGACAACGGCCGTGGGGAAAATGGGCGGCGGAGATAAGAGACCCGTCGCGTGGCGTGCGCGTGTGGCTTGGCACGTTTGAAACGGCTGAAGAAGCTGCTATTGTGTACGATAACGCGGCTATTAAGTTGCGTGGACCAGACGCGCTAACTAATTTTATAACTCCACCCTCCACGTGTCAGTTATCATCACCGGATAATGAAAAACCTCCTCAGCGGTTACCGTTACCGGCAACAAACTCCGATTACATTTCCGGCGAAGAATCTCAATCACAATCTCAATCTCATTCTCAATCTCAAAACAACAAGAGTTTGTTTTCTCCTAAATCAGTTCTTCATTGCTGTTCATCTTCAGAAGAAGTAGCTGAATCTGAGTCAAGATTTTCAATTCCAAATGATATATTATTCGATTTTCAAGATTCTTCACCGGCAAATGATGCATTTAGCAGCTTCAACACCTTACCGGAGAGTATCTTCTACGCTGATATCGATTGTTCTGAGTATTTTGATTTCGGTTTGGAGAGTTTGCATACACATAAGGATGATGACTTTTTTCAAGATATTGATGATTTGTTTGCTTCAGATGCTCTTCTTGCTCTTTAA 936 0.4359 MTKKHTHRLNLTKENTPKEPFPKIVRITVTDKDATDCSSDEEEGFKHNRPKKFVNEIIIEPCVSENKTRGGGGGGSAGGGVSRKRNRTNGGGGKARAPATRQVYSGKKYRGVRQRPWGKWAAEIRDPSRGVRVWLGTFETAEEAAIVYDNAAIKLRGPDALTNFITPPSTCQLSSPDNEKPPQRLPLPATNSDYISGEESQSQSQSHSQSQNNKSLFSPKSVLHCCSSSEEVAESESRFSIPNDILFDFQDSSPANDAFSSFNTLPESIFYADIDCSEYFDFGLESLHTHKDDDFFQDIDDLFASDALLAL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00337 311 Gene3D AP2/ERF domain 107 166 IPR036955 GO:0003700|GO:0006355
Trre10g00337 311 FunFam Ethylene-responsive transcription factor 2 107 166 - -
Trre10g00337 311 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 229 - -
Trre10g00337 311 MobiDBLite consensus disorder prediction 166 215 - -
Trre10g00337 311 ProSiteProfiles AP2/ERF domain profile. 108 165 IPR001471 GO:0003700|GO:0006355
Trre10g00337 311 SMART rav1_2 108 171 IPR001471 GO:0003700|GO:0006355
Trre10g00337 311 MobiDBLite consensus disorder prediction 189 215 - -
Trre10g00337 311 Pfam AP2 domain 108 157 IPR001471 GO:0003700|GO:0006355
Trre10g00337 311 MobiDBLite consensus disorder prediction 64 103 - -
Trre10g00337 311 CDD AP2 107 164 IPR001471 GO:0003700|GO:0006355
Trre10g00337 311 PRINTS Ethylene responsive element binding protein signature 131 147 IPR001471 GO:0003700|GO:0006355
Trre10g00337 311 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Trre10g00337 311 SUPERFAMILY DNA-binding domain 108 164 IPR016177 GO:0003677
Trre10g00337 311 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00337 Trre-Chr10 2187247 2188182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00337 1 224 AP2-EREBP Transcription Factor Family AT4G27950 44.889 7.00e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre10g00337 AP2 9.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00337 - - mtr:11438409 363.999