Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00328 ATGGAAGAACGTCCCCAAAATAAGGCAAAGATCTCATCAAACTCAAGTAAAACTACTTCTGAAGAAGTGAGCAGCAGTGAGTGGGATTTCATAGAGATGAGCGAACAAGAGGAGGATCTCATTTACAGGATGTACGGCCTAGTTGGAGATAGGTGGAATTTGATAGCAGGTCGCATTCCTGGCCGTAAAGCAGAAGAAATAGAGAGATTCTGGATTATGAGACACGGTGATGCTTTTTCTGCCAAAAGAAGTGAACGCAAAGCAAATTAA 270 0.4222 MEERPQNKAKISSNSSKTTSEEVSSSEWDFIEMSEQEEDLIYRMYGLVGDRWNLIAGRIPGRKAEEIERFWIMRHGDAFSAKRSERKAN 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00328 89 SMART sant 29 77 IPR001005 -
Trre10g00328 89 MobiDBLite consensus disorder prediction 1 26 - -
Trre10g00328 89 Gene3D - 33 74 - -
Trre10g00328 89 CDD SANT 32 71 IPR001005 -
Trre10g00328 89 MobiDBLite consensus disorder prediction 8 26 - -
Trre10g00328 89 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 32 74 - -
Trre10g00328 89 FunFam MYB-like transcription factor 32 74 - -
Trre10g00328 89 Pfam Myb-like DNA-binding domain 33 72 IPR001005 -
Trre10g00328 89 SUPERFAMILY Homeodomain-like 34 72 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00328 Trre-Chr10 2107444 2111222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00328 33 71 MYB Transcription Factor Family AT5G52600 58.974 1.96e-12 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre10g00328 Myb_DNA-binding 7.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00328 K09422 - tcc:18606675 132.494