Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00326 ATGGACGGAAAACAAATCAGAACAAACACACAACAATTCCAAGATAGAGGCGATATTGGATCGTCTTTATCTAATCTTATTTTATCGAGTGGAACAAACACACTCGATTCAATTTTCTCGGATATTCCCTCAACAAACACCTCCATCACCGCAACCAACTCCTTAGGTTCTTCGAATTTTGAACCTTTAGGTTCCTCGGTCTATCTTCGCCAAAGAGACATCCTTCAAAAATTCTACGAAGAAACTCGATCAACGAGTTCCTTCGTTCCATCTTCATTTTCAAATCAATCTCTAAACCCGTCTTTATACTCGACAATATCAAATTCAAATTCGTTCAGTTCATTGTTGAACCCTTTGGATTTGAAGAAAAAGTTATACAGAGGAGTGAGACAGAGACACTGGGGAAAATGGGTTGCTGAAATTCGACTTCCTCAGAATAGAATGAGAGTTTGGCTTGGAACTTATGAAACTGCTGAAGCTGCAGCTTATGCTTATGATCGTGCAGCTTATAAGCTTAGAGGTGAATATGCACGTTTGAATTTTCCGAATTTGAAAGATCCAACTAAGTTGGGTTTTGGTGATTCTACTAAATTGAATGCTTTGAAGAATTCTGTTGATGCAAAAATTCAAGCTATTTGTCAAAAGGTGAAAAGAGAAAAAGCTAAAAAAATTGCTGCTAAGAAGATGAAGAAGAATTTAGAAAGTGATAATAAGAAAGAGGAAGCAGAGAAGATTAATTCGTCTTCTTGTTCTTCTTCTTCGTCTTCATTACCTTTGTCGCCGTCGGTTTTTTATGAAGATTGGGTGAATGAATTGTTTTCACCAACTGTTTCTGAGGATGGAGTTTGGAAAGGGGAGAATTCGCCGAATTCTGTTTCGACAATGGTGACAGAAGAGACAGAGTTTGAAGATTGTTCCTTAGCCTTAGCAAGGATGCCATCTTTTGATCCTGAATTGATTTGGGAAGTTCTTGCTGTTTAG 981 0.3772 MDGKQIRTNTQQFQDRGDIGSSLSNLILSSGTNTLDSIFSDIPSTNTSITATNSLGSSNFEPLGSSVYLRQRDILQKFYEETRSTSSFVPSSFSNQSLNPSLYSTISNSNSFSSLLNPLDLKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYETAEAAAYAYDRAAYKLRGEYARLNFPNLKDPTKLGFGDSTKLNALKNSVDAKIQAICQKVKREKAKKIAAKKMKKNLESDNKKEEAEKINSSSCSSSSSSLPLSPSVFYEDWVNELFSPTVSEDGVWKGENSPNSVSTMVTEETEFEDCSLALARMPSFDPELIWEVLAV 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00326 326 Pfam AP2 domain 126 175 IPR001471 GO:0003700|GO:0006355
Trre10g00326 326 SMART rav1_2 125 188 IPR001471 GO:0003700|GO:0006355
Trre10g00326 326 Gene3D AP2/ERF domain 125 183 IPR036955 GO:0003700|GO:0006355
Trre10g00326 326 MobiDBLite consensus disorder prediction 227 258 - -
Trre10g00326 326 ProSiteProfiles AP2/ERF domain profile. 125 182 IPR001471 GO:0003700|GO:0006355
Trre10g00326 326 SUPERFAMILY DNA-binding domain 125 182 IPR016177 GO:0003677
Trre10g00326 326 Coils Coil 216 243 - -
Trre10g00326 326 FunFam Ethylene-responsive transcription factor 2 124 183 - -
Trre10g00326 326 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Trre10g00326 326 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Trre10g00326 326 CDD AP2 124 184 IPR001471 GO:0003700|GO:0006355
Trre10g00326 326 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 19 324 - -
Trre10g00326 326 MobiDBLite consensus disorder prediction 228 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00326 Trre-Chr10 2098235 2099215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00326 18 325 AP2-EREBP Transcription Factor Family AT1G64380 47.143 2.11e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre10g00326 AP2 4.2e-13 CL0081