Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00324 ATGGAAACAACCACCGGAGACACCGCCACGGCGTCACATGGTTTTATATCGGTTATTGGACGGAGGAGAGTGATGGAAGATGCTATTAAGGTTATTCCACGTTTTGTGGCGGCGGAAAAGCAACCGTGTGGTTATGATTTTTTTGCGGTTTATGATGGTCACGGTGGTATGACGGTGGCGAATGCTTGTCGTGATAGGTTGCATGTTTTGTTGGCGGAGGAAGTGAAGGAGGGAAGGAGGAATCATGGGTTTGATTGGTGTAAGGCTATGTGTGAATGTTTTATGAAGATGGATAGGGAAATTGGTGTTGGTGGTGGTGGTGATGTTGATGGGAATACGGTGGGTTCTACGGCGGCTGTTGTGGTGGTTGGGAAGGAGGAGATAGTGGTTGCTAATTGTGGTGATTCTAGGGCGGTTTTGTGTAGTGGCGGTGTAGCGGTTCCACTTTCACGTGATCATAAGCCAGATCTTCCTGATGAAAGAGAGAGGATTGAAGCAGCAGGTGGAAGAGTGATTAATTGGAATGGGAATCGAGTTTTAGGAGTTCTTGCTACTTCTAGATCTATAGGGGATCACTGCATGAAGCCATTTGTGATATCTCAACCTGAGATAAACGTGTACGGAAGAACAAAATCAGATGAATTTCTTGTAGTAGCAAGTGATGGTCTTTGGGATGTAGTTTCAAACACTTTTGTTTGTGAAGTTGTAAGAAGTTGTCTCCAAGGTCATATGAGGATGAGGCATAATCATAATAATCATATAAAAGAAGATCACCATACTATTAAAAGTTATGCAGCTGAAGCTGCAGCAATCTTAGCTGAATTAGCTATGGCTAAGGGAAGCAAAGACAACATTAGTGTTATAGTCATTCAGCTCAACACTAACATTTGA 891 0.4321 METTTGDTATASHGFISVIGRRRVMEDAIKVIPRFVAAEKQPCGYDFFAVYDGHGGMTVANACRDRLHVLLAEEVKEGRRNHGFDWCKAMCECFMKMDREIGVGGGGDVDGNTVGSTAAVVVVGKEEIVVANCGDSRAVLCSGGVAVPLSRDHKPDLPDERERIEAAGGRVINWNGNRVLGVLATSRSIGDHCMKPFVISQPEINVYGRTKSDEFLVVASDGLWDVVSNTFVCEVVRSCLQGHMRMRHNHNNHIKEDHHTIKSYAAEAAAILAELAMAKGSKDNISVIVIQLNTNI 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00324 296 CDD PP2Cc 12 292 IPR001932 -
Trre10g00324 296 SMART PP2C_4 2 290 IPR001932 -
Trre10g00324 296 Pfam Protein phosphatase 2C 13 285 IPR001932 -
Trre10g00324 296 Gene3D - 7 295 IPR036457 -
Trre10g00324 296 FunFam Protein phosphatase 2C 51 5 296 - -
Trre10g00324 296 ProSiteProfiles PPM-type phosphatase domain profile. 12 292 IPR001932 -
Trre10g00324 296 ProSitePatterns PPM-type phosphatase domain signature. 47 55 IPR000222 GO:0043169
Trre10g00324 296 PANTHER PROTEIN PHOSPHATASE 13 291 IPR015655 GO:0004722|GO:0006470
Trre10g00324 296 SUPERFAMILY PP2C-like 11 293 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00324 Trre-Chr10 2066841 2069467 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00324 7 292 PP2C-type Phosphatase Gene Family AT2G29380 46.801 7.97e-84 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00324 K14497 - gmx:100785905 399.823