Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00323 ATGGATCATGCTAATAATATTGTAGCCGACAATATTACTAAATCTAAAGAAATTGAACGACGTTATAATGATTATAGAAAGAAAAGAAAGCGTCCATGTAAAGTGTCGGTGGTTCCGACGATGGAAACAACCACCGGAGACACCGCCACGGCGTCACATGGTTTTATATCGGTTATTGGACGGAGGAGAGTGATGGAAGATGCTATTAAGGTTATTCCACGTTTTGTGGCGGCGGAAAAGCAACCGTGTGGTTATGATTTTTTTGCGGTTTATGATGGTCACGGTGGTATGACGGTGGCGAATGCTTGTCGTGATAGGTTGCATGTTTTGTTGGCGGAGGAAGTGAAGGAGGGAAGGAGGAATCATGGGTTTGATTGGTGTAAGGCTATGTGTGAATGTTTTATGAAGATGGATAGGGAAATTGGTGTTGGTGGTGGTGGTGATGTTGATGGGAATACGGTGGGTTCTACGGCGGCTGTTGTGGTGGTTGGGAAGGAGGAGATAGTGGTTGCTAATTGTGGTGATTCTAGGGCGGTTTTGTGTAGTGGCGGTGTAGCGGTTCCACTTTCACGTGATCATAAGCCAGATCTTCCTGATGAAAGAGAGAGGATTGAAGCAGCAGGTGGAAGAGTGATTAATTGGAATGGGAATCGAGTTTTAGGAGTTCTTGCTACTTCTAGATCTATAGGGGATCACTGCATGAAGCCATTTGTGATATCTCAACCTGAGATAAACGTGTACGGAAGAACAAAATCAGATGAATTTCTTGTAGTAGCAAGTGATGGTCTTTGGGATGTAGTTTCAAACACTTTTGTTTGTGAAGTTGTAAGAAGTTGTCTCCAAGGTCATATGAGGATGAGGCATAATCATAATAATCATATAAAAGAAGATCACCATACTATTAAAAGTTATGCAGCTGAAGCTGCAGCAATCTTAGCTGAATTAGCTATGGCTAAGGGAAGCAAAGACAACATTAGTGTTATAGTCATTCAGCTCAACACTAACATTTGA 1011 0.4214 MDHANNIVADNITKSKEIERRYNDYRKKRKRPCKVSVVPTMETTTGDTATASHGFISVIGRRRVMEDAIKVIPRFVAAEKQPCGYDFFAVYDGHGGMTVANACRDRLHVLLAEEVKEGRRNHGFDWCKAMCECFMKMDREIGVGGGGDVDGNTVGSTAAVVVVGKEEIVVANCGDSRAVLCSGGVAVPLSRDHKPDLPDERERIEAAGGRVINWNGNRVLGVLATSRSIGDHCMKPFVISQPEINVYGRTKSDEFLVVASDGLWDVVSNTFVCEVVRSCLQGHMRMRHNHNNHIKEDHHTIKSYAAEAAAILAELAMAKGSKDNISVIVIQLNTNI 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00323 336 CDD PP2Cc 52 332 IPR001932 -
Trre10g00323 336 PANTHER PROTEIN PHOSPHATASE 34 331 IPR015655 GO:0004722|GO:0006470
Trre10g00323 336 Gene3D - 47 335 IPR036457 -
Trre10g00323 336 ProSiteProfiles PPM-type phosphatase domain profile. 52 332 IPR001932 -
Trre10g00323 336 SMART PP2C_4 42 330 IPR001932 -
Trre10g00323 336 ProSitePatterns PPM-type phosphatase domain signature. 87 95 IPR000222 GO:0043169
Trre10g00323 336 FunFam Protein phosphatase 2C 51 45 336 - -
Trre10g00323 336 SUPERFAMILY PP2C-like 46 333 IPR036457 -
Trre10g00323 336 Pfam Protein phosphatase 2C 53 325 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00323 Trre-Chr10 2066721 2069467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00323 47 332 PP2C-type Phosphatase Gene Family AT2G29380 46.801 2.65e-83 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00323 K14497 - gmx:100813248 425.246