Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00315 ATGTCTTCCTTGAAAATTTCTTTCATATTTTCCATACTCGTCTTACTTTTTCACTCAACAAAAAGCACACCTCCAATTTGTGAAAAGAGATATTGTGGAAACCCAGATATAGGATTGAAGTTCCCATTCCAATTTAGAGAAGAAAATCAAATTAACGATGATCGATGTGGGTACCAAGGATTTGAAGTATATTGCAAAAATAAGAATCAAACTTTGCTTACACTCTCAAATTCAACATTTATTGTCAAATATATTTCCTATGAGAGTCAAAAAATTTGGATCAGTCCCATAGAGTGTCCACCAAAACGGTTCCTTCAAAACATAAACCTCGACAACTATGATTCACCTTTCTCATGGGACAAGCCTCACGTGAATGAAATTTATGAAAATGTAACATTTCTCAATTGTACAAATTTTGCAAAGGACCCAATAGTTAATGATCTTCCTACTATACCTTGTCTAAGCAATGACAAGTATTCAATCATGTATACGTTAGCATCAACTCCTAATAATTTATGGAATCAATCATGTCATGAGATTGGTTTTGCTATGGTTCGAGTCCAAGATTCTTCTGGTAAAAAAAATGGAATCTGGGATGGACTTCACTCTGATATATTGTTGCGGTGGAATACACCTTCTTGTTATTGTGAAGCTGATCAATTTTGTGGCTTTTCAAATGATACGAGTCTTGATGTTACTTGTTACGATACCAGCTACTATTATGTTCCCCAAGGTGAAAAGCCTAAAAATAACTACTTTTTTCCAGTAGTATGGGGAGTATCTGCATTTTTCTTCTTCATATGGGTATCTTTATCCGTATTTAAAAATAGAATGGCGCAAAACAATAGCCAACAAGGAGAAACAATTACAAACGTAGAACCAAGTAATCGAGAACCACCTTGGTTTGTGTTTGGACTTGATCATTCAAGAATAGAACAATATCCAAAGATTCAACTAGCAGAGAGTGGACAATTGCCTAAATCCATTGATAATGTTTGTTCCATATGTCTTAGTGAGTACAAGCCAATGGAGACATTAAGGAGTATACCTCAATGTAATCATCATTTTCATGCTGATTGTATAGATGTTTGGCTCAAGATGAATGCTACTTGCCCTTTATGTCGAAATTTGCCGGTGTGA 1140 0.3491 MSSLKISFIFSILVLLFHSTKSTPPICEKRYCGNPDIGLKFPFQFREENQINDDRCGYQGFEVYCKNKNQTLLTLSNSTFIVKYISYESQKIWISPIECPPKRFLQNINLDNYDSPFSWDKPHVNEIYENVTFLNCTNFAKDPIVNDLPTIPCLSNDKYSIMYTLASTPNNLWNQSCHEIGFAMVRVQDSSGKKNGIWDGLHSDILLRWNTPSCYCEADQFCGFSNDTSLDVTCYDTSYYYVPQGEKPKNNYFFPVVWGVSAFFFFIWVSLSVFKNRMAQNNSQQGETITNVEPSNREPPWFVFGLDHSRIEQYPKIQLAESGQLPKSIDNVCSICLSEYKPMETLRSIPQCNHHFHADCIDVWLKMNATCPLCRNLPV 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00315 379 Pfam Wall-associated receptor kinase galacturonan-binding 27 95 IPR025287 GO:0030247
Trre10g00315 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 378 IPR013083 -
Trre10g00315 379 SUPERFAMILY RING/U-box 332 376 - -
Trre10g00315 379 Pfam Ring finger domain 332 375 IPR001841 -
Trre10g00315 379 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 378 IPR046948 -
Trre10g00315 379 ProSiteProfiles Zinc finger RING-type profile. 333 375 IPR001841 -
Trre10g00315 379 CDD RING-H2_EL5-like 333 375 - -
Trre10g00315 379 SMART ring_2 333 374 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00315 Trre-Chr10 2013075 2014606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00315 22 378 C3H Transcription Factor Family AT2G46495 34.521 5.82e-45 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00315 - - psat:127123903 465.692