Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00285 ATGGAATCTATGTATCAAGAAGAAGGGTCTTCATCTGTAACTTGTTCACCTTTACAGTTATTTTCCATGATGTCACTTTCACCTAACATAGGAGGAATAGGATCTCCATATCCATGGCTTAGTAGAGAATTGAAATCTGAAGAAAGGGGTTTGTATTTGATCCATTTGTTACTCACTTGTGCAAACCATGTAGCTTCTGGTAGTCTTGAAAATGCAAACACAACACTTGAACAAATTTCTCAGCTTGCATCTCCTGATGGAGATACTATGCAGAGAATTGCTGCATATTTTACTGAAGCACTTGCTGATAGGATACTTAAAACTTGGCCTGGACTTCATAGAGCCTTGAATTCGACGAGAATTATTATGCTTTCGGAAGAAATTATGGTTCAGAAGTACTTTTTTGAGCTTTTCCCTTTCTTGAAGGTTGCATATATTTTGACAAATCAAGCTATTGTTGAATCTATGGAAGGTGAGAAAATGGTTCATATTATTGATCTAAATGCTGCTGAGCCTGCACAATGGATTGCTCTTTTACAAGTTTTGAGTGCTCGTCCCGAAGGTCCGCCTCATTTGAGAATCACAGGGATTCATCAACAGAAAGAGGTTTTGGATCAAATGGCTCATAAGCTATCGGAAGAAGCTGAAAAATTGGATATACCATTCCAATTCAATCCTGTTGTTAGCAAGCTAGAGAATCTCGATTTCGACAAACTTCGTGTTAAAACTGGCGAGGCGCTTGCAATAAGTTCTATTCTGCAATTACATTCCCTTTTGGCTTTGGATGATGAATCATCATCCTCAAGGAGAAAAACTCCTCTTCTGTCAAGAAACTCAAATGGACTTCACTTACAAAAAGTCATGCTTATGAACCAAAGCACATCATTAGGTGATTTACTTGAAAAAGATATGGTTAATGGATATACTCCAAGTCCCGATTCAACATCCTCGTCGTCACCAGCATCTTCAACCACTTCATTGAATGCGGAGAGCTTTCTCAATGCCTTGTGGAGTTTGTCGCCGAAAGTAATGGTTGTAACCGAACAAGACTCTAATCACAACGGTTCAACTCTGATGGAGAGGCTACTTGAAGCTCTATATTCTTATGCAGCATTATTTGATTGTTTGGAATCAACCGTGTCAAGAACATCGCTAGAAAGATTTAAGATTGAGAAGATGCTGTTTGGTGAGGAAATCAAGAACATTATTGCTTGTGAAGGAGCTGACAGAAAAGAAAGACATGAAAAGCTTGATAAGTGGTTTATGAGACTTGAGTTATGTGGTTTTGGTAATGTCCCTTTAAGCTATTATGGTATGTTGCAGGCAAGGAGGTTTCTGCAGAGTTATGGTTGTGAAGGATACAAAATGAGAGAAGAAAATGGTTGTGTAGCAATTTGCTGGCAAGATAGGTCATTGTTTTCAACAACAGCTTGGAGAGCTAGGAAGTGA 1449 0.3865 MESMYQEEGSSSVTCSPLQLFSMMSLSPNIGGIGSPYPWLSRELKSEERGLYLIHLLLTCANHVASGSLENANTTLEQISQLASPDGDTMQRIAAYFTEALADRILKTWPGLHRALNSTRIIMLSEEIMVQKYFFELFPFLKVAYILTNQAIVESMEGEKMVHIIDLNAAEPAQWIALLQVLSARPEGPPHLRITGIHQQKEVLDQMAHKLSEEAEKLDIPFQFNPVVSKLENLDFDKLRVKTGEALAISSILQLHSLLALDDESSSSRRKTPLLSRNSNGLHLQKVMLMNQSTSLGDLLEKDMVNGYTPSPDSTSSSSPASSTTSLNAESFLNALWSLSPKVMVVTEQDSNHNGSTLMERLLEALYSYAALFDCLESTVSRTSLERFKIEKMLFGEEIKNIIACEGADRKERHEKLDKWFMRLELCGFGNVPLSYYGMLQARRFLQSYGCEGYKMREENGCVAICWQDRSLFSTTAWRARK 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00285 482 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 48 475 IPR005202 -
Trre10g00285 482 MobiDBLite consensus disorder prediction 303 323 - -
Trre10g00285 482 ProSiteProfiles GRAS family profile. 44 479 IPR005202 -
Trre10g00285 482 MobiDBLite consensus disorder prediction 308 323 - -
Trre10g00285 482 Pfam GRAS domain family 53 479 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00285 Trre-Chr10 1852881 1854329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00285 1 482 GRAS Transcription Factor Family AT1G50420 66.462 0.0 652
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre10g00285 GRAS 2.2e-139 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00285 - - cave:132164091 746.888