Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00281 ATGTCTGGAACTCTACACTATGGTGATGGTGTTACTGGAGAGAACAGGAGGCAAAAGCGCAAGATGGATGGAAGAATTGCCGCTGATTCAAACGTGTCATTGTCTTTGAGTATAGGGGGTGGATCTTCATTCAATTCCCTTCAGATCCAGGAACAAAGGAAATACCCATGTAAGTTTTGCAGCAAGACATTTTCAAGTCCTCAAGCCTTGGGAGGACACCAAAATGCCCATAGGCGTGAAAGGGTGCTTTCGAGAATGGAGACAGAAATTCAAATGGGGATTTTTGGACTTGGTCATCATTTGTGTCCATGCTCAAATCCTCCTTATTATCATCAACATCCTTTCACTGCTGCAAGGACTATGCCTTTTTATCATGGAATTGGATGGCCTCATCTTGTTGCACCTACAGGCTATGGCAATCCATTTGGGATGATCAACAACTCTGGTGTCACTCAAACTCCACTGAACAATAATAACAATAATATGAGATTTGATAATTATGGACGTAATAATCAGCTGCAGGTTCCTTCATTTGGTGCTACTCATAACAATTATTTTCTAATGGAAAATAATAATCACAATGCCTAG 588 0.4082 MSGTLHYGDGVTGENRRQKRKMDGRIAADSNVSLSLSIGGGSSFNSLQIQEQRKYPCKFCSKTFSSPQALGGHQNAHRRERVLSRMETEIQMGIFGLGHHLCPCSNPPYYHQHPFTAARTMPFYHGIGWPHLVAPTGYGNPFGMINNSGVTQTPLNNNNNNMRFDNYGRNNQLQVPSFGATHNNYFLMENNNHNA 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00281 195 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Trre10g00281 195 Gene3D Classic Zinc Finger 42 92 - -
Trre10g00281 195 Pfam C2H2-type zinc finger 55 80 - -
Trre10g00281 195 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 82 IPR013087 -
Trre10g00281 195 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 46 190 IPR044246 GO:0009788
Trre10g00281 195 SUPERFAMILY beta-beta-alpha zinc fingers 52 82 IPR036236 -
Trre10g00281 195 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00281 Trre-Chr10 1803699 1804286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00281 51 99 C2H2 Transcription Factor Family AT5G25160 46.939 3.13e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre10g00281 zf-C2H2_6 2e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00281 - - tpra:123904723 268.855