Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00263 ATGAATTGGATTGGTTCAAGTTCAACAAGCACAAGTCATGGAAATGACAAGAAGTTAAAGGGAGTTCGGCGTCGAAAATGGGGCAAATGGGTGTCTGAGATTCGAGTTCCGGGGACTCAAGAGCGTTTATGGTTGGGAACTTATGCTACGCCGGAGGCTGCTGCGGTGGCGCACGACGTAGCGGTTTATTGTTTAAAAAGACCTTCTACTTTGGACAAACTCAATTTTCCTGAGATTTTGTCTTCTTATTGTATTCAACAGAGAGATCATTTGATGTCTCCTAGGTCTGTTCAGAAGATTGCTTCGGATATTGCTATGGATGTCGATGCACGAAACATCGCAAGAGAAACAACGATGAATAATGAAACTCATCATCACAATAATGAGAATCAGCAGGTGCATAATGTTGTTGCTGATGATGTGTTTTGGTGGGAAGGTTTGTGTGGTGATGACTTGAATTTGCAAGGAGTTACTCAAGTTTCAAGTCAACAACAAGAGGACTTGAACATTTCCATTGAAGATTATCTTTAG 531 0.4143 MNWIGSSSTSTSHGNDKKLKGVRRRKWGKWVSEIRVPGTQERLWLGTYATPEAAAVAHDVAVYCLKRPSTLDKLNFPEILSSYCIQQRDHLMSPRSVQKIASDIAMDVDARNIARETTMNNETHHHNNENQQVHNVVADDVFWWEGLCGDDLNLQGVTQVSSQQQEDLNISIEDYL 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00263 176 CDD AP2 17 78 IPR001471 GO:0003700|GO:0006355
Trre10g00263 176 Gene3D AP2/ERF domain 18 79 IPR036955 GO:0003700|GO:0006355
Trre10g00263 176 SMART rav1_2 18 83 IPR001471 GO:0003700|GO:0006355
Trre10g00263 176 MobiDBLite consensus disorder prediction 1 15 - -
Trre10g00263 176 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Trre10g00263 176 MobiDBLite consensus disorder prediction 1 20 - -
Trre10g00263 176 Pfam AP2 domain 18 66 IPR001471 GO:0003700|GO:0006355
Trre10g00263 176 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 131 - -
Trre10g00263 176 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Trre10g00263 176 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Trre10g00263 176 ProSiteProfiles AP2/ERF domain profile. 18 77 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00263 Trre-Chr10 1697203 1697733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00263 18 176 AP2-EREBP Transcription Factor Family AT1G22810 43.396 3.80e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre10g00263 AP2 1.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00263 - - mtr:11437172 252.292