Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00256 ATGGGATTCTGGGGGATTGAAGTTAAACCTGGCAAACCGGTTCCTTATCACACTGATAATGTGCAAGGGAAGCTTCATGTCACTCAGGCTACATTAGGAGGTGGTTCATCAGGGGGAAAAAGCATTCTTCAGTGCTCTTCCGGACACAAAAATCCAGTTTTTCTGTGTACTTTGCTGCCAAATAAGGTTGAGACGTGCCCTTTGAATCTTAAGTTTGATGAGGAAGACTTGGTGGCATTCTCAGTCATCGGTTCCCGAAGCATCCATCTTTCTGGTTATTTTGTGGCAGATGATGAGGACGACCTAAGGGATGACTATGAATATGATTCATTAGGAGAGGACGTGGGAACTGATTCAGAGGAGTCATCTGAATATGATAGCGAAAATGGATATGATGATCATTTTTTTGACGATAGTGATATGGAGATGTACACATCTTCACCAGTCCGTAATAGTGGAGTTGTCATTGAGGAACTACCCGATGACAATCAGCCTGAAAATGGAGATGATCCAGCTAAGAAATCAAAGAAAAAGGAACAGCCAGCTCTCTTGAAAGAGAAAGCTAGCAAAAGTTCTCAGCTTCCAGATGATCCTAGTGGTGACAAGAACCTCGTTCTGGAAAGTGAAGATGAAGATGGTTTCCCAATTTCCACCTCAGAGAAAGTTAAAACTGAGTCTCAGAAGTCAAAAGGAGAACAAGCCCACAAAAAAAATGGGAAATCCAACAAGAAGGAAAAGGATGTTGATCTCTCTGCTAGCTTAAAACGAAAAGGTCAAGTTGTCGAAGAGGATGAGCAGCTGCAAGATGGGAAGAAGACAAAGAAGAATAAGTTGAAAGATCATGGTAAGGAAGAAATTGCTCATTTAAAGGAGACTAATGTTACTGTGCAAGATGAAAAGCATTCTGAGGGTGAGGAGGTTAAAACTACAACCAACCAGAACAATGTTTCTCATGCAAATGCTGGAAATGATGGAAAACAGTCAAATAACGAAGTCCTTGCTGAGAAGAAAAACAAGAAAAAAACCAAAGAGACTGAAGGAGAAGCTGCTGCGAATGACATTGCCACACCTGTTGAAAATAAGAAGTTGTCGACCTCTGAGAAAAAAGAGAAAGGAGCTCAAACTGAAGCCAAGCCATCTAATGTGAGAACCTATCCGAATGGGTTGGTTATAGAGGACATATCTATGGGTAAACCAGATGGCAAAAGAGCTGATCTTGGAAAAAAGGTCAGTGTTAAATATATTGGCAAGCTAAAAAAAGATGGGAAAATATTTGATTCATGTGTTGGAAAAGCACCCTTTAAGTTTCGCCTTGGTGTAGGACAAGTCATCAAGGGGTGGGATGTTGGCATCAATGGGATGAGGGTTGGGGACAAAAGAAGACTTACAATTCCACCATCTATGGGATACGGAGACAAACGCGCTGGGACTATACCACAAAATTCGTGGCTTGTATTTGATGTTGAGTTGGTTGGTGTTGGTAACTAA 1488 0.414 MGFWGIEVKPGKPVPYHTDNVQGKLHVTQATLGGGSSGGKSILQCSSGHKNPVFLCTLLPNKVETCPLNLKFDEEDLVAFSVIGSRSIHLSGYFVADDEDDLRDDYEYDSLGEDVGTDSEESSEYDSENGYDDHFFDDSDMEMYTSSPVRNSGVVIEELPDDNQPENGDDPAKKSKKKEQPALLKEKASKSSQLPDDPSGDKNLVLESEDEDGFPISTSEKVKTESQKSKGEQAHKKNGKSNKKEKDVDLSASLKRKGQVVEEDEQLQDGKKTKKNKLKDHGKEEIAHLKETNVTVQDEKHSEGEEVKTTTNQNNVSHANAGNDGKQSNNEVLAEKKNKKKTKETEGEAAANDIATPVENKKLSTSEKKEKGAQTEAKPSNVRTYPNGLVIEDISMGKPDGKRADLGKKVSVKYIGKLKKDGKIFDSCVGKAPFKFRLGVGQVIKGWDVGINGMRVGDKRRLTIPPSMGYGDKRAGTIPQNSWLVFDVELVGVGN 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00256 495 MobiDBLite consensus disorder prediction 202 307 - -
Trre10g00256 495 MobiDBLite consensus disorder prediction 166 185 - -
Trre10g00256 495 MobiDBLite consensus disorder prediction 330 348 - -
Trre10g00256 495 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 402 491 IPR001179 GO:0003755
Trre10g00256 495 MobiDBLite consensus disorder prediction 106 127 - -
Trre10g00256 495 MobiDBLite consensus disorder prediction 106 383 - -
Trre10g00256 495 SUPERFAMILY FKBP-like 364 493 - -
Trre10g00256 495 MobiDBLite consensus disorder prediction 308 329 - -
Trre10g00256 495 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Trre10g00256 495 Gene3D Nucleoplasmin core domain 1 101 - -
Trre10g00256 495 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 407 494 IPR001179 GO:0003755
Trre10g00256 495 FunFam Peptidyl-prolyl cis-trans isomerase 382 495 - -
Trre10g00256 495 PIRSF FK506-bp_FPR3 46 279 IPR023566 GO:0003755
Trre10g00256 495 PIRSF FK506-bp_FPR3 1 52 IPR023566 GO:0003755
Trre10g00256 495 PIRSF FK506-bp_FPR3 252 494 IPR023566 GO:0003755
Trre10g00256 495 MobiDBLite consensus disorder prediction 362 376 - -
Trre10g00256 495 Gene3D - 351 495 IPR046357 GO:0003755
Trre10g00256 495 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 41 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00256 Trre-Chr10 1641220 1645284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00256 407 491 Calmodulin-binding Proteins AT3G25230 51.724 1.53e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00256 K14826 - gmx:100792856 625.55