Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00254 ATGCAAGAATCAAACACCATGCATCAAGAACATGTTGAAATTACTCCTCCAACACCAAACACAACATCTTATATAGGAGTTAGGAAAAGAAAATGGGGAAAATTTGTATCAGAAATAAGAGAACCAGGTAAGAAAAGTAGAATTTGGTTAGGGAGCCATGAAGAACCACAAATGGCAGCAGCAGCTTATGATGTAGCAGCATTTCATCTTAAAGGTCGTGCCGCGAGGCTAAATTTTCCTGAATTGGTTGAAAAACTTCCAATGCCTTCAAGTTCTGAAGCAGAGGATATTCGTGTAGCAGCTCAACAAGCAGCATTGCAGTTCAAGACAAGAACATCGTCACGAATATCCTCTGCTTCGGCTTCTGAAGGGGGTGGCAGTAGCAATGGAAATGGAAATGTTGTTCCTTCTGTAAGAGTTGGGCTTTCACCTTCTCAAATTCAAGCGATCAACGAGCTTCCTTTTGATTCACCAAAGATGTTTGGATTTGAATTTGATGAATCTAGGATGATGTTTTATGATGATAGTAATGCTTTAGAGTTGAGTGAATGGGAAGAAATACAGTATGACTCATTGTGGGACTAG 585 0.3983 MQESNTMHQEHVEITPPTPNTTSYIGVRKRKWGKFVSEIREPGKKSRIWLGSHEEPQMAAAAYDVAAFHLKGRAARLNFPELVEKLPMPSSSEAEDIRVAAQQAALQFKTRTSSRISSASASEGGGSSNGNGNVVPSVRVGLSPSQIQAINELPFDSPKMFGFEFDESRMMFYDDSNALELSEWEEIQYDSLWD 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00254 194 CDD AP2 24 82 IPR001471 GO:0003700|GO:0006355
Trre10g00254 194 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Trre10g00254 194 MobiDBLite consensus disorder prediction 115 137 - -
Trre10g00254 194 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Trre10g00254 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 148 - -
Trre10g00254 194 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Trre10g00254 194 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
Trre10g00254 194 MobiDBLite consensus disorder prediction 1 23 - -
Trre10g00254 194 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Trre10g00254 194 PRINTS Ethylene responsive element binding protein signature 62 82 IPR001471 GO:0003700|GO:0006355
Trre10g00254 194 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Trre10g00254 194 FunFam Ethylene-responsive transcription factor 2 22 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00254 Trre-Chr10 1613625 1614209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00254 22 194 AP2-EREBP Transcription Factor Family AT1G71450 52.299 2.75e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre10g00254 AP2 9.4e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00254 - - cam:101493379 241.506