Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00244 ATGAACTTCAAATTGGAAACCTGTCGTGTTGGTTTAGAGTTTGTTGACGATCTTCCGGAATCAACCGACTTATTGGAGTTTAGTCATGTTTCTAATGCATTTGGTATAAGTTATGAGAAAGAGTTAACTTATTATGACATTAGTACTGGATTTTTGATCCTTCCATACAAAGAGTTTGGTGAGAAGGCTTTCGACAAAAAAACAACCACACTTAAGTTACTTGATGATTGTGGACATAAATGGTATTGTGTTCTCATATATGTTTCATTTCCGTATGAGCATTACAAGATTGGTGGTGAGTGGAAACGATTTGTTGCAGCGCGAAGACTTTCTGTGGGTGATCGTATTAAAGTTGGTGGTTACCTTAGAGAAAAAAATGAAGAACTTTACTTAATTATTTGTCCTTGA 408 0.3529 MNFKLETCRVGLEFVDDLPESTDLLEFSHVSNAFGISYEKELTYYDISTGFLILPYKEFGEKAFDKKTTTLKLLDDCGHKWYCVLIYVSFPYEHYKIGGEWKRFVAARRLSVGDRIKVGGYLREKNEELYLIICP 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00244 135 CDD B3_DNA 37 135 IPR003340 GO:0003677
Trre10g00244 135 Gene3D - 34 134 IPR015300 -
Trre10g00244 135 ProSiteProfiles B3 DNA-binding domain profile. 37 135 IPR003340 GO:0003677
Trre10g00244 135 SUPERFAMILY DNA-binding pseudobarrel domain 37 116 IPR015300 -
Trre10g00244 135 Pfam B3 DNA binding domain 42 134 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00244 Trre-Chr10 1565900 1566388 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre10g00244 B3 1.3e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00244 - K11717 tpra:123908244 137.887