Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00218 ATGGGAACAAGAAACTTTCTATGGAATTTTACGAAAAAGTTCGTCACATTTGGTCTCATTACTGTCACTATCTCCGATCGTTATGTAACTGTTGTTCCTGTTCGTGGTGCTTCTATGTCTCCTACTTTCAATCCTAATACTCATTCTTTCACAGATGATTATGTCTTGGTTGAGAAATTTTGCCTTCAGAAGTATAAGTTTTCGCATGGCGATATCGTAATCTTCCGTTCACCATCGAATTACAAGGAGACGCACATAAAGAGAATAATTGCATTACCTGGTGAGTGGTTTGTTAGTCGTCATGACCAAGATGTACATAAGATTCCAGATGGACATTGTTGGGTCGAGGGAGACAATGCAGCGTCAAGCACGGATTCAAAATCATATGGATCTATTCCTTTGGGTTTAGTACGAGGAAGGGTTACCCATGTTGTGTGGCCTCCGCAAAGAATAGGAGCTGTCAAGAATAATAATACACCAGAAGGATTACCATCTTCATAG 501 0.4012 MGTRNFLWNFTKKFVTFGLITVTISDRYVTVVPVRGASMSPTFNPNTHSFTDDYVLVEKFCLQKYKFSHGDIVIFRSPSNYKETHIKRIIALPGEWFVSRHDQDVHKIPDGHCWVEGDNAASSTDSKSYGSIPLGLVRGRVTHVVWPPQRIGAVKNNNTPEGLPSS 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00218 166 SUPERFAMILY LexA/Signal peptidase 29 154 IPR036286 -
Trre10g00218 166 Pfam Signal peptidase, peptidase S26 8 95 IPR019533 GO:0004252|GO:0006465
Trre10g00218 166 Pfam Signal peptidase, peptidase S26 102 146 IPR019533 GO:0004252|GO:0006465
Trre10g00218 166 CDD S26_SPase_I 31 141 IPR019533 GO:0004252|GO:0006465
Trre10g00218 166 Gene3D Umud Fragment, subunit A 24 158 - -
Trre10g00218 166 FunFam Mitochondrial inner membrane protease subunit 25 159 - -
Trre10g00218 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 27 43 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre10g00218 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 85 97 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre10g00218 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 108 127 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre10g00218 166 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 1 160 IPR037730 GO:0006465|GO:0006627|GO:0008236|GO:0042720
Trre10g00218 166 NCBIfam signal peptidase I 17 101 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00218 Trre-Chr10 1386330 1388041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00218 39 154 MADS-box Gene Family AT1G29960 39.344 1.13e-20 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00218 K09648 - cave:132191989 252.677