Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00206 ATGATGAGGTTGAAGACATATGCTGGTCTTAGTTTGATTGCAACTTTGGCTATTACATATCATGCATTTAACAGTAGAGGCCAGTTTTATCCGGCAATGGTGTATCTTTCAACATCCAAGATCAGTTTGGTGCTTCTACTCAACATGGGTTTGGTTATTATGTGTGTTTTGTGGCAACTAACGAAGAAGGTTTTCTTGGGTAATCTTCGAGAAGCGGAGGTTGAGAGACTTAATGAGCAATCGTGGAGGGAGGTTATGGAGATTCTCTTTGCGATTACTATTTTTAGGCAGGATTTCTCGGTTACTTTCCTAGCGATGGTTACAGCACTGTTGTTAATTAAGGCTTTGCATTGGTTGGCTCAAAAGAGAGTTGAGTACATTGAGACCACTCCTACGGTGACCACACTGTCCCATATTCGGATTGTGTCTTTTATGGGTTTCCTTCTTCTTCTAGATAGCATTTTCTTATATAGTTCTTTGAAGCATTTGATAGAAACATGGCAGGCTTCCGTTTCGCTGTTCTTTGCTTTTGAGTACATGATATTGGCAACAACAACAGTGTCAATTTTTGTAAAATATGTTTTCTATGTCAGCGACATGCTTATGGAGGGACAGTGGGAAAAGAAACCAGTCTTTACATTTTACCTGGAACTTGTTAGGGACTTGCTACACTTGTCCATGTATCTGTGCTTCTTCTGTGTTATATTTGTAAACTACGGCATTCCCTTGCACCTAATACGGGAGCTGTACGAGACATTTAGGAACTTCAAAGTTCGCATTGCAGATTACATTAGATATCGTAAGATCACTTCAAATATGAATGATCGCTTTCCAGATGCAACCCCTGAAGAGCTCATTGCTAGTGATGCAACTTGCATCATCTGTCGTGAAGAGATGACTACAGCCAAGAAACTGATATGTGGACATCTTTTTCATGTTCATTGCCTCCGATCATGGCTGGAACGACAGCATACTTGCCCTACCTGCAGAGCCTTGGTTGTACCACCAGAAAATGGAACAACTGTTGCTGGAGGGCAGCAAGGATCACAATCAGATAATCAACGACAGGGCACTGGAAGCACAAGTCAAACTGAGCTTGGCAGTGGGGTGGCAACTGATAGTTTGAGTCGGCATCAAGCTAGACTCCAAGCAGCAGCTGCTGCAGCTGCAATATATGAGAAGTCTTATGTTTATCCCTCTGCAACTTCTTTTGTACGACCTCCTGGAGAGCAAGCTTCCAGTCAACAAGCCCAGAAGCAGTTTCATATTCCTGGTGGGCCAGCAAATGTACCCTTTCCTCCAATGGGGCACTTCCATTTTCTTCCTTCCCAACCACATGTGACCCCTTTGAATTATGGAGAGGGGTTTGGAAATGATCCAAATATCCAAAGCTTGCAGTTTGAAGCTAATAAAAAATTACTGCAACAACAGATTGAGATTCTGCAAAATCATCTACAGAATCTGCAGTTCACGGAAGCTGAGAGAAGTGTAGATGATGGGACATCATCATCATCAGAAAGCAGAGGCAAGCTTAGCACTTCTGCGGAGATTCATGATTGA 1560 0.425 MMRLKTYAGLSLIATLAITYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCVLWQLTKKVFLGNLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPTVTTLSHIRIVSFMGFLLLLDSIFLYSSLKHLIETWQASVSLFFAFEYMILATTTVSIFVKYVFYVSDMLMEGQWEKKPVFTFYLELVRDLLHLSMYLCFFCVIFVNYGIPLHLIRELYETFRNFKVRIADYIRYRKITSNMNDRFPDATPEELIASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTVAGGQQGSQSDNQRQGTGSTSQTELGSGVATDSLSRHQARLQAAAAAAAIYEKSYVYPSATSFVRPPGEQASSQQAQKQFHIPGGPANVPFPPMGHFHFLPSQPHVTPLNYGEGFGNDPNIQSLQFEANKKLLQQQIEILQNHLQNLQFTEAERSVDDGTSSSSESRGKLSTSAEIHD 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00206 519 MobiDBLite consensus disorder prediction 492 511 - -
Trre10g00206 519 Pfam Ring finger domain 291 330 IPR001841 -
Trre10g00206 519 PANTHER RING ZINC FINGER PROTEIN 1 505 - -
Trre10g00206 519 MobiDBLite consensus disorder prediction 340 374 - -
Trre10g00206 519 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 264 339 - -
Trre10g00206 519 Coils Coil 471 494 - -
Trre10g00206 519 MobiDBLite consensus disorder prediction 492 519 - -
Trre10g00206 519 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Trre10g00206 519 SMART ring_2 292 329 IPR001841 -
Trre10g00206 519 CDD RING-H2_synoviolin 289 330 - -
Trre10g00206 519 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 337 IPR013083 -
Trre10g00206 519 SUPERFAMILY RING/U-box 272 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00206 Trre-Chr10 1322648 1326984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00206 1 510 C3H Transcription Factor Family AT3G16090 65.709 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00206 K10601 - gmx:100782356 806.208