Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00202 ATGTTGTCATTAGCTCATGCCAAACAAGCCACTACTACAGATTCTGTAGTAATTCACCAACAAAAACAAAAGCCCTCTCATGATTATGATTCTACTAATCATATATTTAAATCTAAATTACCAGATATACCAATATCTAACCACCTCCCACTCCACACCTACTGCTTCGAAAAACTCTCCGAAATCTCCGATCGTCCTTGTCTCATCGTCGCTTCCACCGGAAAAACATACACCTATGGAGAAACTTATCTCCAATGTCGAAAAATCGCCGCCGGTTTATCCAAATTAGGAATCCAAAAAGGCGATGTAATTATGATTCTCCTTCAAAATTCAGCTGAATTTGTTTTCTCCTTCCTCGCCGCCTCCATGATCGGTGCAGTCGCCACCACCGCTAATCCTTTCTACACCAGTGCCGAGATCTTCAAACAAATAACGGTTTCCAAGACGAAACTAATCATCACACAAGCAATGTACGTAGATAAACTGAAGCAGAGTGAGAAGGATGAATTAATTGATTTCAAGATAATCACCGTCGATGAACCGCCGGAGAATTGTTTACATTTCTCGGTGATTTCTGAAGAAAATGAAGATGAATTACCGGAAGTGGAATTCGATCCAGAAGACGCGGTGGCGCTTCCGTTTTCTTCCGGAACAACCGGATTACCTAAAGGAGTAATTCTAACGCATAAGAGCTTAATAACAGGCGTTGCTCAACAAGTCGATGGAGAGAATCCGAATCTGTATTTAACAAAAGAAGATGTTCTTCTTTGCGTTCTTCCATTGTTTCATATATTTGCGCTCAGCACTGTGCTATTGTGCGCACTGAGAGCAGGAAGTGCGGTTCTGTTAATGCAAAAATTCGAGATCGGAACATTGCTTGGTCTTATACAGAAACATAAAGTGACGGTGGCGATGGTTGTTCCGCCGCTAGTTTTGGCGTTAGCGAAGAATCCTATTGTGGCGGAGTTTGATCTTAGTTCGATAAGGTTGGTGCTTTCAGGAGCTGCGCCGTTAGGAGAGGAGCTTGAAGAAATGCTTCGTAACAGAATTCCTCAAGCCGTTTTGGGACAAGGATATGGTATGACAGAGGCAGGCCCGGTTCTATCCATGTCTTTAAGTTTTGCAAAGCATCCATTGCCAGTAAGCTCAGGTTCATGTGGCACAGTTGTAAGAAATGCAGAGCTCAAAGTTCTTGACCGTGAAACTGGTCGTTCTCTTGGTTATAATCAACCTGGTGAAATTTGCATTCGAGGCCAACAAATCATGAAAGGATATTTGAATGATGTGAATGCAACAAAAGCAACTATTGATGAGGGGGGTTGGCTTCATACCGGTGATATTGGATATATAGATGACAATGATGAGATTTTTATCGTTGAGAGAGTGAAGGAACTCATCAAATTCAAAGGCTTCCAAGTACCCCCTGCTGAACTTGAAGGCCTTCTTATAAGCCATCCATCAATTGTAGATGCAGCTGTTGTCCCGCAAAAAGATGTTGCTGCTGGTGAAGTTCCTGTTGCCTTTGTGGTAAGATCAAATGGACTTGATCTAACTGAAGAAGCTGTAAAGGAGTTTATAGCTAAACAGGTTGTGTTTTATAAGAGACTGCACAAAGTTTATTTCATTAATGCAATTCCAAAGTCTCCATCAGGAAAGATATTGAGGAAAGATCTCAAAGCAAAGTTAGAAAGTACCACCTAA 1701 0.4156 MLSLAHAKQATTTDSVVIHQQKQKPSHDYDSTNHIFKSKLPDIPISNHLPLHTYCFEKLSEISDRPCLIVASTGKTYTYGETYLQCRKIAAGLSKLGIQKGDVIMILLQNSAEFVFSFLAASMIGAVATTANPFYTSAEIFKQITVSKTKLIITQAMYVDKLKQSEKDELIDFKIITVDEPPENCLHFSVISEENEDELPEVEFDPEDAVALPFSSGTTGLPKGVILTHKSLITGVAQQVDGENPNLYLTKEDVLLCVLPLFHIFALSTVLLCALRAGSAVLLMQKFEIGTLLGLIQKHKVTVAMVVPPLVLALAKNPIVAEFDLSSIRLVLSGAAPLGEELEEMLRNRIPQAVLGQGYGMTEAGPVLSMSLSFAKHPLPVSSGSCGTVVRNAELKVLDRETGRSLGYNQPGEICIRGQQIMKGYLNDVNATKATIDEGGWLHTGDIGYIDDNDEIFIVERVKELIKFKGFQVPPAELEGLLISHPSIVDAAVVPQKDVAAGEVPVAFVVRSNGLDLTEEAVKEFIAKQVVFYKRLHKVYFINAIPKSPSGKILRKDLKAKLESTT 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00202 566 SUPERFAMILY Acetyl-CoA synthetase-like 37 564 - -
Trre10g00202 566 Gene3D - 463 565 IPR045851 -
Trre10g00202 566 FunFam 4-coumarate--CoA ligase 2 464 565 - -
Trre10g00202 566 Gene3D - 26 462 IPR042099 -
Trre10g00202 566 Pfam AMP-binding enzyme 63 468 IPR000873 -
Trre10g00202 566 CDD 4CL 45 558 - -
Trre10g00202 566 ProSitePatterns Putative AMP-binding domain signature. 212 223 IPR020845 -
Trre10g00202 566 FunFam Long-chain-fatty-acid--CoA ligase FadD 37 463 - -
Trre10g00202 566 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 30 560 - -
Trre10g00202 566 Pfam AMP-binding enzyme C-terminal domain 477 552 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00202 Trre-Chr10 1306959 1311674 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00202 32 475 Monolignol Biosynthesis Gene Families AT1G65060 72.036 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00202 K01904 - gmx:547492 885.945