Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00201 ATGTTGTCATTAGCTCCTTCTATTGATGCCAAACAAACCACTACTACACAAGTCTCTGCTGCTTCTGCTAATCATGATTCCATTATTAATAATTCTCAACAACAACAAAGTACTAATCATATATTTAAATCTAAATTACCAGATATACCAATATCTAACCACCTCCCACTCCACACCTATTGCTTCGAAAAACTCTCCGAAATCTCCGATCGTCCTTGTCTAATCATCGCTTCCACCGGAAAAACATACACATACGGAGAAACTTATCTCCAATGTCGAAAAATCGCTGCCGGTTTATCCAAATTAGGAATCCAAAAAGGCGATGTAATTATGATTCTCCTTCAAAATTCAGCTGAATTTGTTTTCTCCTTCCTCGCCGCCTCCATGATCGGTGCAGTCGCCACCACCGCTAATCCTTTCTACACCAGCGCCGAGATCTTCAAACAAATAATCGCTTCCAAAACAAAGCTAATCATCACGCAAGCAATGTACGTTGATAAACTGAAGCAGAACGAGGAGAAAGATGAATTAATTGATTTCAAGATAATCACCGTCGATGAACCGCCGGTGAATTGTTTACATTTCTCGGTAATTTCCGAAGCAAATGAAGATGAATTACCGGAAGTGGAATTCGATCCAGAAGATGCGGTGGCGCTTCCGTTTTCTTCCGGAACAACAGGATTACCTAAAGGAGTAATTCTAACGCATAAAAGCTTAACAACAAGCGTTGCTCAACAAGTCGATGGAGAGAATCCGAATCTGTATTTAACAACAGAAGATGTTCTTCTTTGCGTTCTTCCATTGTTTCATATATTTTCTCTTAACAGTGTGCTATTGTGCGCACTGAGAGCAGGGAGTGCTGTTCTGTTAATGCATAAATTCGAGATCGGAACGTTGCTTGGTCTTATACAGAAACATAAAGTGACGGTGGCGATGGTTGTTCCGCCGTTAGTTTTGGCGTTAGCGAAGAATCCAACGGTGGCGGAATTTGATCTTAGTTCGATACGGTTAGTGCTATCAGGAGCTGCGCCGTTAGGGAAGGAGCTCGAAGAAACGCTTCATAACCGAATTCCTCAAGCCGTTTTGGGACAGGGATACGGTATGACAGAGGCAGGCCCTGTATTGTCCATGTCTTTGGGTTTTGCAAAGCATCCATTGCCAGTAAGTTCGGGTTCATGTGGAACTGTTGTAAGAAATGCAGAGCTCAAAATTCTTGACCCTGAAACTGGTCGTTCTCTTGGTTATAATCAACCCGGTGAAATTTGCATTCGTGGCCAACAAATCATGAAAGGATATTTGAATGACGAGAATGCAACAAAAACTACTATTGATGAAGAGGGTTGGCTTCATACCGGTGATGTTGGCTATATAGATGACAATGATGAGATTTTCATTGTTGATAGGGTGAAGGAACTCATCAAATTCAAAGGCTTCCAAGTGCCCCCTGCTGAACTTGAAGGCCTTCTAGTAAGCCATCCATCTATTGCAGATGCAGCCGTTGTCCCGCAAAAAGATGTTGCTGCTGGTGAAGTTCCTGTTGCCTTTGTGGTAAGATCAAATGGACTTGATCTAACTGAAGAAGCTGTAAAGGAGTTTATAGCTAAACAGGTTGTATTTTATAAGAGACTGCACAAAGTGTATTTCATTCATGCAATTCCAAAGTCTCCATCAGGAAAAATACTGAGGAAAGACCTCAGAGCAAAGTTAGAAAGTACCACCCAAAAGCCTTGA 1731 0.4171 MLSLAPSIDAKQTTTTQVSAASANHDSIINNSQQQQSTNHIFKSKLPDIPISNHLPLHTYCFEKLSEISDRPCLIIASTGKTYTYGETYLQCRKIAAGLSKLGIQKGDVIMILLQNSAEFVFSFLAASMIGAVATTANPFYTSAEIFKQIIASKTKLIITQAMYVDKLKQNEEKDELIDFKIITVDEPPVNCLHFSVISEANEDELPEVEFDPEDAVALPFSSGTTGLPKGVILTHKSLTTSVAQQVDGENPNLYLTTEDVLLCVLPLFHIFSLNSVLLCALRAGSAVLLMHKFEIGTLLGLIQKHKVTVAMVVPPLVLALAKNPTVAEFDLSSIRLVLSGAAPLGKELEETLHNRIPQAVLGQGYGMTEAGPVLSMSLGFAKHPLPVSSGSCGTVVRNAELKILDPETGRSLGYNQPGEICIRGQQIMKGYLNDENATKTTIDEEGWLHTGDVGYIDDNDEIFIVDRVKELIKFKGFQVPPAELEGLLVSHPSIADAAVVPQKDVAAGEVPVAFVVRSNGLDLTEEAVKEFIAKQVVFYKRLHKVYFIHAIPKSPSGKILRKDLRAKLESTTQKP 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00201 576 CDD 4CL 51 565 - -
Trre10g00201 576 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 36 567 - -
Trre10g00201 576 SUPERFAMILY Acetyl-CoA synthetase-like 49 571 - -
Trre10g00201 576 Gene3D - 470 573 IPR045851 -
Trre10g00201 576 Pfam AMP-binding enzyme C-terminal domain 484 559 IPR025110 -
Trre10g00201 576 ProSitePatterns Putative AMP-binding domain signature. 219 230 IPR020845 -
Trre10g00201 576 FunFam 4-coumarate--CoA ligase 2 471 572 - -
Trre10g00201 576 Gene3D - 31 469 IPR042099 -
Trre10g00201 576 FunFam Long-chain-fatty-acid--CoA ligase FadD 43 470 - -
Trre10g00201 576 Pfam AMP-binding enzyme 69 475 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00201 Trre-Chr10 1299164 1304453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00201 38 482 Monolignol Biosynthesis Gene Families AT1G65060 72.768 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00201 K01904 - gmx:547492 913.679