Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00196 ATGGCAACAATACCATTTATGGATATACTCAGTTATACACTTATCTTCTTGTTGTTATTCATTGTTACACAAGTTTTTTCTTCACTAATTTCAGCCATAACAAGAAACAAATCAAAATTCAAGCTTCCACCAGGACCTTTCCCTCTTCCCATAGTTGGAAACCTCTTTGTAATGGACAACAAACCACATAAATCCTTAGCCAAACTTGCCAAAATTTATGGTCCAATACTTAGTTTAAAGCTAGGACAAGTAACAACCATAGTTATCTCTTCGGCCGATATGGCCAAAGAGATACTTCAAACTCATGATTCATCACTTTCAGACCGATCTGTACCACATGCTTTAACCGCTTTCAACCACGACCAATTTGGCGTGGGATTCCTCCCTCTTTCGCCTATGTGGCGAGAGATGAGAAGGGTATGCAAAAATCAACTATTCTCTAACAAGAGTCTTGATGCGAATCAATATCTTAGACGTAATAAGATAGATGAACTCGTTAATTATGTTTCTCAATATAGTCTAAAGGGTGAAGCAATAGACATTGGAAGTTTAGCTTTCAAGACTTCAATTAATTTGTTGTCAAATACTATTTTGTCTGTAGACTTTGCTACTATCTCTGCAGGTATTAATGACAATAAAGAAAACAAAGATTTGGTTATGAATATGGCGAAGACGGTAGGAGTGCCAAACATGTCTGATTTTTTCCCATTGTTGAGGTTGATTGATCCACAAGGCATAAAAAAGACCTATGTGTTTTATATTGAAAAGTTGTTCGGCGTTTTCAACAACATAATCGACCAAAGGTTGAAGTTACGAGAAGGGAACAATTTTGTCCCCAACAACGACATGCTAGACTCCTTACTCGATCTTTTTGAAGAAAACAAAAAGGAGATGGACAGAGAAAAAATGGAACATTTACTACATGATCTAATTGTTGGAGGAACTGATACAACTACATATACATTAGAATGGGCATTGACTGAATTACTTCGCAATCCAAATATAATGTCAAAAGCCAAAAAGGAACTTGAAGAAATAATTGGAATAGGAAACTCAATTGAGGAATCAGATATTGCTAGACTTCCTTACTTACAAGCAATCATAAAAGAGACTTTACGTTTGCACCCAATAGCTCCACTTTTGCTCCCTCGAAAAGCAAAGACTGATGTTGAAGTCAATGGCTACATGATTCCGAAAGGTGCACAAATTTTCGTTAATGTGTGGGCTATTGGTAGAGATCAAAACGCATGGGAAAATCCAAATTTATTTTCACCAGAGAGATATTTGGGAACAAAACTCGATATCAAGGGTCAAAATTTTCAGCTCACGCCGTTTGGTAGTGGGAGGCGAATATGTCCCGGTTTGCCGTTGGCTATGAGGATGTTGCACATGATGTTGGGATCATTACTAATTTCTTTTGATTGGAAGCTAGAAAATGACATGAAACCTGAAGAAATTGACATGGAGGATGCAATAGAAGGACTTGCCTTGAGAAAATGTGAATCTTTGAGAGCTATTCCAACCAAAATAATTAAGTAA 1539 0.3684 MATIPFMDILSYTLIFLLLFIVTQVFSSLISAITRNKSKFKLPPGPFPLPIVGNLFVMDNKPHKSLAKLAKIYGPILSLKLGQVTTIVISSADMAKEILQTHDSSLSDRSVPHALTAFNHDQFGVGFLPLSPMWREMRRVCKNQLFSNKSLDANQYLRRNKIDELVNYVSQYSLKGEAIDIGSLAFKTSINLLSNTILSVDFATISAGINDNKENKDLVMNMAKTVGVPNMSDFFPLLRLIDPQGIKKTYVFYIEKLFGVFNNIIDQRLKLREGNNFVPNNDMLDSLLDLFEENKKEMDREKMEHLLHDLIVGGTDTTTYTLEWALTELLRNPNIMSKAKKELEEIIGIGNSIEESDIARLPYLQAIIKETLRLHPIAPLLLPRKAKTDVEVNGYMIPKGAQIFVNVWAIGRDQNAWENPNLFSPERYLGTKLDIKGQNFQLTPFGSGRRICPGLPLAMRMLHMMLGSLLISFDWKLENDMKPEEIDMEDAIEGLALRKCESLRAIPTKIIK 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00196 512 Coils Coil 281 304 - -
Trre10g00196 512 Gene3D Cytochrome P450 32 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g00196 512 Pfam Cytochrome P450 43 489 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g00196 512 PRINTS P450 superfamily signature 452 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g00196 512 PRINTS P450 superfamily signature 366 377 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g00196 512 PRINTS P450 superfamily signature 313 330 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g00196 512 PRINTS P450 superfamily signature 443 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g00196 512 CDD CYP76-like 70 507 - -
Trre10g00196 512 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 445 454 IPR017972 GO:0005506|GO:0016705
Trre10g00196 512 PRINTS E-class P450 group I signature 94 115 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g00196 512 PRINTS E-class P450 group I signature 406 430 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g00196 512 PRINTS E-class P450 group I signature 70 89 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g00196 512 PRINTS E-class P450 group I signature 365 383 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g00196 512 PRINTS E-class P450 group I signature 322 348 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g00196 512 PRINTS E-class P450 group I signature 302 319 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g00196 512 PRINTS E-class P450 group I signature 442 452 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g00196 512 PRINTS E-class P450 group I signature 452 475 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g00196 512 SUPERFAMILY Cytochrome P450 43 490 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g00196 512 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 17 509 - -
Trre10g00196 512 FunFam Cytochrome P450 76C4 34 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00196 Trre-Chr10 1269967 1271602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00196 7 509 Cytochrome P450 AT2G45550 44.618 2.42e-161 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00196 - - gmx:100792017 564.303