Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00183 ATGAAGATGAATCAAAACCTGTTACTGAAGCTCATCAATTGCAGGGGTTGTGTACATGAAGGGAGTGCATTCCATTGGATAATACCAAGCTTCATGGTCCAAGGGAGTGATTTCACCATTGGCAAAGGAAGAGGTGGAGAATCAATCTATGGCGATAACTTTGCTGATGAAAACTTCAAGCTGAAGCATATTGGGCCAGGATACTATCAAATCAAATCATCATCTGGACCGAAATACTATCAAATTAAATATGTTATGATAGTCACTAGACTAAAATATAAGGAATGA 288 0.3785 MKMNQNLLLKLINCRGCVHEGSAFHWIIPSFMVQGSDFTIGKGRGGESIYGDNFADENFKLKHIGPGYYQIKSSSGPKYYQIKYVMIVTRLKYKE 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00183 95 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 19 79 - -
Trre10g00183 95 Gene3D - 5 89 IPR029000 -
Trre10g00183 95 SUPERFAMILY Cyclophilin-like 15 69 IPR029000 -
Trre10g00183 95 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 1 95 IPR002130 GO:0000413|GO:0003755
Trre10g00183 95 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 18 73 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00183 Trre-Chr10 1201290 1202631 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00183 14 94 U-box Gene Family AT5G67530 42.353 9.57e-11 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00183 K01802 - csav:115719545 92.4337