Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00171 ATGGCTGCAATTTTTGCTTCCAGATGTTCTCGTGTGGGCCGTTCTCTGCTCGGTGGATTAAACAACAGTTCCCCTGGTCTATTTACCATGTCGCATGAGATGACATGCAGCAATTATTTTTCTCAGCAACAAAGAACCTTCATACAGATGAGGACTGTTCTAAAGGTTGTGGACAATTCCGGGGCTAAAAAGGTGATGTGCATACACGCGTTGACAGGAAAGAGAGGAGCAAGATTAGGTGATATGATAAAAGCATCAGTGAAGGAAGCACATCCTAATGGAAAAGTGAAGAAAGGAGCGACTGTATTTGCCGTGGTTGTTCGTGCAGCAATGCCAAAGGGGAGGTGTGATGGCAGTGAGGTCAAGTTTGATGACAATGCTGTTGTGCTTGTTGACAAACAAGGGCAGCCTATTGGGACCAGAGTTTTCGGACCAGTTCCTCATGAGTTGAGGCAGAAGAAGCATGTCAAGATCCTTACCTTAGCTGGCCATATTGCATAG 501 0.4571 MAAIFASRCSRVGRSLLGGLNNSSPGLFTMSHEMTCSNYFSQQQRTFIQMRTVLKVVDNSGAKKVMCIHALTGKRGARLGDMIKASVKEAHPNGKVKKGATVFAVVVRAAMPKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAGHIA 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00171 166 Hamap 50S ribosomal protein L14 [rplN]. 47 166 IPR000218 GO:0003735|GO:0005840|GO:0006412
Trre10g00171 166 FunFam 50S ribosomal protein HLP, mitochondrial-like 47 166 - -
Trre10g00171 166 Gene3D Ribosomal protein L14 47 166 IPR036853 GO:0003735|GO:0005840|GO:0006412
Trre10g00171 166 ProSitePatterns Ribosomal protein L14 signature. 104 130 IPR019972 -
Trre10g00171 166 SUPERFAMILY Ribosomal protein L14 48 165 IPR036853 GO:0003735|GO:0005840|GO:0006412
Trre10g00171 166 SMART Ribosomal_L14_2 47 166 IPR000218 GO:0003735|GO:0005840|GO:0006412
Trre10g00171 166 Pfam Ribosomal protein L14p/L23e 48 165 IPR000218 GO:0003735|GO:0005840|GO:0006412
Trre10g00171 166 NCBIfam 50S ribosomal protein L14 48 165 IPR005745 GO:0003735|GO:0006412|GO:0015934
Trre10g00171 166 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 48 165 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00171 Trre-Chr10 1126439 1128993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00171 58 149 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 36.364 1.43e-09 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00171 K02874 - gmx:100818301 275.404