Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00149 ATGTACACATCAAAGAAGAAAATCAGCAAAGATAAAGGTGCTGAGCCAACTGAATTTGAGGAATCTGTTGGACAGGCTTTGTTTGATCTAGAAAATACCAACAATGAGCTGAAAAGTGATCTCAAAGATTTATACATAAACTCAGCAGTCCAAATCGATGTTTCTGGCAACCGTAAGGCTGTGCTTATTCAAGTCCCTTACAGATTGAGGAAGGGTTTCCGCAAAATTCATGTCAAGCTTGTTAGAGAGCTTGAGAAGAAATTTAGCGGCAAGGAAGTGATTGTGATTGCCACCAGGAGGATTGTTCGGCCTCCAAAGAAAGGCTCCGCTGCTCAGCGCCCCCGCAGCCGTACACTTACTGCTGTGCATGAGGCAATTCTCGAGGATGTCGTATTACCTGCTGAGATTGTTGGGAAGCGTACTCGTTACAGAGTTGATGGATCAAAGATCATGAAGGTGTTTTTGGACCCAAAGGAGCGTAATAATACCGAGTACAAGTTGGAGACATTTGCTGCAGTTTACAGGAAACTATCAGGCAAAGATGTCGTGTTTGAGTATCCAGTTACCGAGGCTTAG 576 0.4392 MYTSKKKISKDKGAEPTEFEESVGQALFDLENTNNELKSDLKDLYINSAVQIDVSGNRKAVLIQVPYRLRKGFRKIHVKLVRELEKKFSGKEVIVIATRRIVRPPKKGSAAQRPRSRTLTAVHEAILEDVVLPAEIVGKRTRYRVDGSKIMKVFLDPKERNNTEYKLETFAAVYRKLSGKDVVFEYPVTEA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00149 191 PANTHER 40S RIBOSOMAL PROTEIN S7 1 190 IPR000554 GO:0003735|GO:0005840|GO:0006412
Trre10g00149 191 ProSitePatterns Ribosomal protein S7e signature. 79 92 IPR000554 GO:0003735|GO:0005840|GO:0006412
Trre10g00149 191 Coils Coil 27 47 - -
Trre10g00149 191 Pfam Ribosomal protein S7e 7 186 IPR000554 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00149 Trre-Chr10 1042300 1043590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00149 1 191 Cytoplasmic Ribosomal Protein Gene Family AT1G48830 77.487 1.45e-113 319