LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre10g00127	ATGGATACACCAGAGAGGAACCAGATCAACACTACTCTCTCTAAGTTCGAGGATTCACCAGTATTCAACTATATCAACAATTTATCTCCTATAAAGCCAGTTAAATCTGCTCACATTACTCAAACTTTCAATTCACTTAGCTTTTCGTCTCCTCCGTCTGTTTTCACATCACCACATGCCACCTCTTTCAAGGAGTCTAGATTCTTACGCCGACATAACCTACCGAGCGCTTCAAAGCCTAAGGGTTCGTCTGAAGATGTAAATAAAGTGTACTCCAATGAAGTGGCTCTTGCAGATTCCACTCTTTCACAGCATAACTCAAGTGAATTACATGAAAGTGCTGGTCAAGGGATTTCGGTAGGAGATGCTACTATTGAGCTATCGAACGAACAGACAAAGTTCTCAGATGAGTTACCACAGGCCTTACAGTATAACTGTGGTAGTCCTGGTTATGACCCTCCGCTATGTGCTGATGAGGCTAACTCTCTTTTGGAATTGTCTGGTGAAGATGTATCGGATATTGCTTATGTTCGGGAAGATAGTAAAACAGATTTGGTTGAGGCTGATATGCATCTTCAAGGAACAAGTCAGATCGATCCAAAGGGTGAAGGCTCTGACTGTGATTGGGATGGTTTAATTCACAATGCTTCTGCTGATATGTTAATTGAAGCAGAAGCTTTTAAGGGTTTAGCGTTTAAGGGTCTAATGCAGGGCTCTTCTATACGACTTAGCGATTTTGTTCCCCTGCTACAACAATCTACTAGCAATAATGATCAGAAAATACATTTGGTTGATTCAGTTGCTTCTGGTTCTGAACATGAAATTGAAAATCATTGTTCTGAGCTAGTTGCCGTGACAGACACTGACCCTACACAGGACAATCATTCTGATGGTTCTTTGATGACTAGCAACCCAAATGAGAAAATGGATAATAAGCTTGTTTCTGTCACGCACCGTGGTATTCGGAGGCGCTGTCTTGACTTTGAGATGGCCAGTGTGCGAAAGAAGATCTCAGATAATAATTCAAACGCCGGCTCTAGTACAACACAGTCGGAAGTAAGAAATGCTGCGGATGAAAAACAACTGCTCCCAGCAAAACGCAATGCTAATTCACAAAGGTGCATTTTACCGGGTATCGGTTTACACCTTAATGCACTTGCTACTGTAAAGGATCACAAAGGCAAGCAAAACGAAAATGCGACTTCTGAAAGACAACTCAGTCTGGCCAACTCTACTTCCTTGCTACTATCTGCATGCCAAGACCATCAGCACCTATCGGTCTTATCTGTATCAGTATCCTCTGAAAGAGAATTGGACCCATCAGACAATGGGGTTCATCCTGCTGAAGATTGTCCCCAGGCACTTGCTTACATGGCTGCTGAAGATTTCAACCCGAATAGCCCCAAAAAGAAAAGGCAAATGAAGCGTAAGTTAGAGCCAGTTGGTGAAACCGAGGGCTGCAAACGTTGTAATTGCAAGAAATCAAAGTGCCTGAAACTTTATTGTGAGTGTTTTGCTGCTGGTGTTTACTGCATTGAGCCCTGCTCCTGTCAGGAATGCTTCAACAAACCTATTCATGAAGATACTGTTCTTCAAACTCGCAAACAGATTGAGTCTCGCAACCCTCTTGCATTTGCTCCTAAAGTCATTCGAAGTGCAGACTCTGTGCCTGAAGTTGGGATTGACCCAAACAAAACTCCAGCTTCAGCGCGCCATAAAAGAGGGTGCAACTGCAAGAAATCAAGCTGCCTAAAGAAATATTGTGAATGCTATCAGGGCGGTGTTGGTTGCTCCATTAGCTGCAGATGTGAAGGGTGCAAGAACGCATTCGGAAGAAAGGATGGGTCTGCTTCAATAGGGATAGAAGGTGAGATAGAAGAAGAAACTGAAACAAGTGACAAGGGTGTGGAGGAAAAGGCTATTCAGAAAACTGAGATTCAAAATATTGAAGATCATCAAGAGTCTTCTTTGGTCTCAACACCGTTACAGCTTTCCAGGCCAATGCTTCCGATGCCCTTTTCATCAAAGGGAAAGCCACCGAGATCTTTTGTTACAACCATTACTGGTTCTGGATATTTTGCCACCCAAAAGCTTGCGATGCCAAATTCTCTTTGGTCTCAATCTAAGCCTTTTCAGACTGTTCCAGACGATGAAATGCCAGAGATTCTCCGCGGTGATAGCTCTCCTGTTGCATGCATCAAAACATCATCTCCAAATGGCAAGAGGATCTCTTCTCCTAACTGTGAAATGGGATCATCTCCTGCTCGCAGAGGCGGAAGGAAGTTGATATTACAATCTATTCCTTCGTTTCCTTCTCTCACCACTCACCCTTAA	2334	0.4327	MDTPERNQINTTLSKFEDSPVFNYINNLSPIKPVKSAHITQTFNSLSFSSPPSVFTSPHATSFKESRFLRRHNLPSASKPKGSSEDVNKVYSNEVALADSTLSQHNSSELHESAGQGISVGDATIELSNEQTKFSDELPQALQYNCGSPGYDPPLCADEANSLLELSGEDVSDIAYVREDSKTDLVEADMHLQGTSQIDPKGEGSDCDWDGLIHNASADMLIEAEAFKGLAFKGLMQGSSIRLSDFVPLLQQSTSNNDQKIHLVDSVASGSEHEIENHCSELVAVTDTDPTQDNHSDGSLMTSNPNEKMDNKLVSVTHRGIRRRCLDFEMASVRKKISDNNSNAGSSTTQSEVRNAADEKQLLPAKRNANSQRCILPGIGLHLNALATVKDHKGKQNENATSERQLSLANSTSLLLSACQDHQHLSVLSVSVSSERELDPSDNGVHPAEDCPQALAYMAAEDFNPNSPKKKRQMKRKLEPVGETEGCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQECFNKPIHEDTVLQTRKQIESRNPLAFAPKVIRSADSVPEVGIDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNAFGRKDGSASIGIEGEIEEETETSDKGVEEKAIQKTEIQNIEDHQESSLVSTPLQLSRPMLPMPFSSKGKPPRSFVTTITGSGYFATQKLAMPNSLWSQSKPFQTVPDDEMPEILRGDSSPVACIKTSSPNGKRISSPNCEMGSSPARRGGRKLILQSIPSFPSLTTHP	777

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre10g00127	777	Pfam	Tesmin/TSO1-like CXC domain, cysteine-rich domain	574	609	IPR005172	-
	Trre10g00127	777	Pfam	Tesmin/TSO1-like CXC domain, cysteine-rich domain	488	523	IPR005172	-
	Trre10g00127	777	ProSiteProfiles	CRC domain profile.	486	611	IPR005172	-
	Trre10g00127	777	MobiDBLite	consensus disorder prediction	288	307	-	-
	Trre10g00127	777	PANTHER	PROTEIN TESMIN/TSO1-LIKE CXC 2	1	774	IPR044522	GO:0003700
	Trre10g00127	777	MobiDBLite	consensus disorder prediction	736	777	-	-
	Trre10g00127	777	SMART	CXC_2	485	526	IPR033467	-
	Trre10g00127	777	SMART	CXC_2	571	612	IPR033467	-
	Trre10g00127	777	MobiDBLite	consensus disorder prediction	736	751	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre10g00127	Trre-Chr10	877488	881792	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre10g00127	16	774	CPP Transcription Factor Family	AT4G14770	44.473	3.44e-156	468

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	CPP	Trre10g00127		TCR	1.9e-11	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre10g00127	-		-	mtr:11423771	1260.74