Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00126 ATGGATACACCAGAGAGGAACCAGATCAACACTACTCTCTCTAAGTTCGAGGATTCACCAGTATTCAACTATATCAACAATTTATCTCCTATAAAGCCAGTTAAATCTGCTCACATTACTCAAACTTTCAATTCACTTAGCTTTTCGTCTCCTCCGTCTGTTTTCACATCACCACATGCCACCTCTTTCAAGGAGTCTAGATTCTTACGCCGACATAACCTACCGAGCGCTTCAAAGCCTAAGGGTTCGTCTGAAGATGTAAATAAAGTGTACTCCAATGAAGTGGCTCTTGCAGATTCCACTCTTTCACAGCATAACTCAAGTGAATTACATGAAAGTGCTGGTCAAGGGATTTCGGTAGGAGATGCTACTATTGAGCTATCGAACGAACAGACAAAGTTCTCAGATGAGTTACCACAGGCCTTACAGTATAACTGTGGTAGTCCTGGTTATGACCCTCCGCTATGTGCTGATGAGGCTAACTCTCTTTTGGAATTGTCTGGTGAAGATGTATCGGATATTGCTTATGTTCGGGAAGATAGTAAAACAGATTTGGTTGAGGCTGATATGCATCTTCAAGGAACAAGTCAGATCGATCCAAAGGGTGAAGGCTCTGACTGTGATTGGGATGGTTTAATTCACAATGCTTCTGCTGATATGTTAATTGAAGCAGAAGCTTTTAAGGGTTTAGCGTTTAAGGGTCTAATGCAGGGCTCTTCTATACGACTTAGCGATTTTGTTCCCCTGCTACAACAATCTACTAGCAATAATGATCAGAAAATACATTTGGTTGATTCAGTTGCTTCTGGTTCTGAACATGAAATTGAAAATCATTGTTCTGAGCTAGTTGCCGTGACAGACACTGACCCTACACAGGACAATCATTCTGATGGTTCTTTGATGACTAGCAACCCAAATGAGAAAATGGATAATAAGCTTGTTTCTGTCACGCACCGTGGTATTCGGAGGCGCTGTCTTGACTTTGAGATGGCCAGTGTGCGAAAGAAGATCTCAGATAATAATTCAAACGCCGGCTCTAGTACAACACAGTCGGAAGTAAGAAATGCTGCGGATGAAAAACAACTGCTCCCAGCAAAACGCAATGCTAATTCACAAAGGTGCATTTTACCGGGTATCGGTTTACACCTTAATGCACTTGCTACTGTAAAGGATCACAAAGGCAAGCAAAACGAAAATGCGACTTCTGAAAGACAACTCAGTCTGGCCAACTCTACTTCCTTGCTACTATCTGCATGCCAAGACCATCAGCACCTATCGGTCTTATCTGTATCAGTATCCTCTGAAAGAGAATTGGACCCATCAGACAATGGGGTTCATCCTGCTGAAGATTGTCCCCAGGCACTTGCTTACATGGCTGCTGAAGATTTCAACCCGAATAGCCCCAAAAAGAAAAGGCGTAAGTTAGAGCCAGTTGGTGAAACCGAGGGCTGCAAACGTTGTAATTGCAAGAAATCAAAGTGCCTGAAACTTTATTGTGAGTGTTTTGCTGCTGGTGTTTACTGCATTGAGCCCTGCTCCTGTCAGGAATGCTTCAACAAACCTATTCATGAAGATACTGTTCTTCAAACTCGCAAACAGATTGAGTCTCGCAACCCTCTTGCATTTGCTCCTAAAGTCATTCGAAGTGCAGACTCTGTGCCTGAAGTTGGGATTGACCCAAACAAAACTCCAGCTTCAGCGCGCCATAAAAGAGGGTGCAACTGCAAGAAATCAAGCTGCCTAAAGAAATATTGTGAATGCTATCAGGGCGGTGTTGGTTGCTCCATTAGCTGCAGATGTGAAGGGTGCAAGAACGCATTCGGAAGAAAGGATGGGTCTGCTTCAATAGGGATAGAAGGTGAGATAGAAGAAGAAACTGAAACAAGTGACAAGGGTGTGGAGGAAAAGGCTATTCAGAAAACTGAGATTCAAAATATTGAAGATCATCAAGAGTCTTCTTTGGTCTCAACACCGTTACAGCTTTCCAGGCCAATGCTTCCGATGCCCTTTTCATCAAAGGGAAAGCCACCGAGATCTTTTGTTACAACCATTACTGGTTCTGGATATTTTGCCACCCAAAAGCTTGCGATGCCAAATTCTCTTTGGTCTCAATCTAAGCCTTTTCAGACTGTTCCAGACGATGAAATGCCAGAGATTCTCCGCGGTGATAGCTCTCCTGTTGCATGCATCAAAACATCATCTCCAAATGGCAAGAGGATCTCTTCTCCTAACTGTGAAATGGGATCATCTCCTGCTCGCAGAGGCGGAAGGAAGTTGATATTACAATCTATTCCTTCGTTTCCTTCTCTCACCACTCACCCTTAA 2325 0.4331 MDTPERNQINTTLSKFEDSPVFNYINNLSPIKPVKSAHITQTFNSLSFSSPPSVFTSPHATSFKESRFLRRHNLPSASKPKGSSEDVNKVYSNEVALADSTLSQHNSSELHESAGQGISVGDATIELSNEQTKFSDELPQALQYNCGSPGYDPPLCADEANSLLELSGEDVSDIAYVREDSKTDLVEADMHLQGTSQIDPKGEGSDCDWDGLIHNASADMLIEAEAFKGLAFKGLMQGSSIRLSDFVPLLQQSTSNNDQKIHLVDSVASGSEHEIENHCSELVAVTDTDPTQDNHSDGSLMTSNPNEKMDNKLVSVTHRGIRRRCLDFEMASVRKKISDNNSNAGSSTTQSEVRNAADEKQLLPAKRNANSQRCILPGIGLHLNALATVKDHKGKQNENATSERQLSLANSTSLLLSACQDHQHLSVLSVSVSSERELDPSDNGVHPAEDCPQALAYMAAEDFNPNSPKKKRRKLEPVGETEGCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQECFNKPIHEDTVLQTRKQIESRNPLAFAPKVIRSADSVPEVGIDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNAFGRKDGSASIGIEGEIEEETETSDKGVEEKAIQKTEIQNIEDHQESSLVSTPLQLSRPMLPMPFSSKGKPPRSFVTTITGSGYFATQKLAMPNSLWSQSKPFQTVPDDEMPEILRGDSSPVACIKTSSPNGKRISSPNCEMGSSPARRGGRKLILQSIPSFPSLTTHP 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00126 774 MobiDBLite consensus disorder prediction 733 774 - -
Trre10g00126 774 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 771 IPR044522 GO:0003700
Trre10g00126 774 ProSiteProfiles CRC domain profile. 483 608 IPR005172 -
Trre10g00126 774 MobiDBLite consensus disorder prediction 288 307 - -
Trre10g00126 774 MobiDBLite consensus disorder prediction 733 748 - -
Trre10g00126 774 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 485 520 IPR005172 -
Trre10g00126 774 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 571 606 IPR005172 -
Trre10g00126 774 SMART CXC_2 482 523 IPR033467 -
Trre10g00126 774 SMART CXC_2 568 609 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00126 Trre-Chr10 877488 881792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00126 16 771 CPP Transcription Factor Family AT4G14770 44.645 3.62e-158 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Trre10g00126 TCR 1.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00126 - - mtr:11423771 1266.14