Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00103 ATGGGAGAACCTGCATATACTGTGGCATCTGACAGTGAAACTACTGGGGAGGAAAAGACCTTACCTCTTCCTGAAATAGCAATTGGAATTGACATTGGCACCTCACAGTGCAGTGTTGCTGTGTGGAATGGTTCCCAAGTGGAGCTTTTGAAAAACAAAAGAAATCAGAAGCTTATGAAATCATTTGTCACTTTCAAAGATGAATCCCCGTCTGGTGGAGTTACCAGTCAACTCTCCCATGAGCATGAAATGCTTTCCGGAGATACAATTTTCAACATGAAACGTTTGATTGGAAGAGTTGATACTGACCCTGTAGTCCATGCAAGTAAAAATCTCCCATTTCTAGTGCAGACGTTGGACATTGGTGTCCGGCCCTTTATTGCTGCATTAGTGAACAATGTCTGGAGGTCCACCACTCCAGAAGAAGTCCTTGCAATGTTTCTGGTGGAGTTAAGACTGATGACTGAATCTCATCTGAAACGGCCGATAAGAAATGTAGTGCTTACGGTTCCAGTTTCCTTCAGTCGTTTTCAGCTGACTCGCCTTGAGCGTGCTTGTGCAATGGCTGGTCTTCATGTTCTCAGACTAATGCCTGAACCAACAGCAGTGGCATTGTTGTATGGACAGCAACAACAGAAAGCTTCTCAAGAAACTATGGGCAGTGGAAGTGAGAAAATTGCTCTCATTTTCAATATGGGGGCGGGTTATTGTGATGTTGCTGTGACTGCTACCGCTGGAGGAGTATCCCAGATAAAAGCATTGGCAGGAAGTACCATTGGTGGAGAAGATTTGCTTCAGAATATGATGCGTCATCTCTTACCAGATTCTGAAAATATATTCAAGCGCCACGGGGTTGAAGAAATTAAATCAATGGCATTGCTTCGAGTTGCAACCCAAGATGCAATTCATCAGCTTTCCACCCAAACAAGTGTCCAGGTCGATGTAGATTTGGGAGATGGTGTGAAGATATGCAAGGTTATTGACAGGGCAGAGTTTGAGGAGGTGAACAAAGAGGTATTTGAAAAGTGTGAAAGCCTTATCATCCAGTGTTTACATGATGCAAAGGTAGAAGTTGAGGACGTAAATGATGTGATAGTTGTTGGTGGATGTTCTTATATCCCAAGGGTGAAGAATCTGGTTACCAAAATATGCAAAGTAACAGATGCTTATAAAGGTATAAATCCTTTGGAATGTGCGGTTTGTGGTGCAGCGATGGAAGGAGCTGTTGCTTCCGGCATTATTGATCCCTTTGGAAATTTGGACTTGTTAACCATTCAAGCCACTCCTCTTGCCATTGGAATTCGAGCTGATGGAAACAAGTTTGTCCCTGTGATTCCGAGGAACACGACAATGCCCGCACGTAAGGATCTACTTTTTACAACTATTCATGATAATCAAACTGAGGCATTGATACTTGTGTACGAAGGTGAGGAAAAGAAGGCAGAAGAAAACCACTTGTTGGGATATTTCAAGATAATGGGAATACCTGCAGCACCCAAAGGAGTTCCTGAAATCAATGTGTGCATGGACATAGATGCTGCAAACGTGCTGAGAGTTTTAGCGGGTGTCGTGATGCCTGGATCTCGTACACCTGCAGTTCCTGTTATGGAAGTGCGAATGCCGATGGTTGATGATGGGCATGGTTGGTGTGCTGAGGCCCTAAATAGGACATATGGTGCCACATTGGATTTGGTAACCCTCAAGAAGGCATGA 1713 0.439 MGEPAYTVASDSETTGEEKTLPLPEIAIGIDIGTSQCSVAVWNGSQVELLKNKRNQKLMKSFVTFKDESPSGGVTSQLSHEHEMLSGDTIFNMKRLIGRVDTDPVVHASKNLPFLVQTLDIGVRPFIAALVNNVWRSTTPEEVLAMFLVELRLMTESHLKRPIRNVVLTVPVSFSRFQLTRLERACAMAGLHVLRLMPEPTAVALLYGQQQQKASQETMGSGSEKIALIFNMGAGYCDVAVTATAGGVSQIKALAGSTIGGEDLLQNMMRHLLPDSENIFKRHGVEEIKSMALLRVATQDAIHQLSTQTSVQVDVDLGDGVKICKVIDRAEFEEVNKEVFEKCESLIIQCLHDAKVEVEDVNDVIVVGGCSYIPRVKNLVTKICKVTDAYKGINPLECAVCGAAMEGAVASGIIDPFGNLDLLTIQATPLAIGIRADGNKFVPVIPRNTTMPARKDLLFTTIHDNQTEALILVYEGEEKKAEENHLLGYFKIMGIPAAPKGVPEINVCMDIDAANVLRVLAGVVMPGSRTPAVPVMEVRMPMVDDGHGWCAEALNRTYGATLDLVTLKKA 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00103 570 Pfam Hsp70 protein 27 521 IPR013126 GO:0005524|GO:0140662
Trre10g00103 570 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 423 528 IPR029047 -
Trre10g00103 570 Gene3D - 28 408 - -
Trre10g00103 570 FunFam Heat shock 70 kDa protein 8 261 342 - -
Trre10g00103 570 SUPERFAMILY Actin-like ATPase domain 26 210 IPR043129 -
Trre10g00103 570 Gene3D - 91 146 - -
Trre10g00103 570 PANTHER HEAT SHOCK PROTEIN 70KDA 27 521 IPR013126 GO:0005524|GO:0140662
Trre10g00103 570 FunFam Heat shock 70 kDa protein 8 91 146 - -
Trre10g00103 570 Gene3D - 212 390 - -
Trre10g00103 570 FunFam Heat shock 70 kDa protein 8 416 531 - -
Trre10g00103 570 PRINTS 70kDa heat shock protein signature 166 186 - -
Trre10g00103 570 PRINTS 70kDa heat shock protein signature 361 377 - -
Trre10g00103 570 PRINTS 70kDa heat shock protein signature 26 39 - -
Trre10g00103 570 PRINTS 70kDa heat shock protein signature 393 413 - -
Trre10g00103 570 PRINTS 70kDa heat shock protein signature 421 440 - -
Trre10g00103 570 PRINTS 70kDa heat shock protein signature 502 518 - -
Trre10g00103 570 SUPERFAMILY Actin-like ATPase domain 224 409 IPR043129 -
Trre10g00103 570 CDD HSP70_NBD 28 408 - -
Trre10g00103 570 Gene3D Actin; Chain A, domain 4 261 342 - -
Trre10g00103 570 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 419 532 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00103 Trre-Chr10 742570 744282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00103 27 521 Calmodulin-binding Proteins AT3G12580 37.747 7.36e-104 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00103 K09489 - gmx:100809773 981.474