LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre10g00084	ATGCTGGCGAATCATATCCAAAACGGCATCGAATCGGCGAGGGTAGCTTGGTCACGGATTCCGAACTCCGATGAATCACAGTTCGTTGATGAAGACGGCGTTGGTCTTGTTAAGAAGAACGATGGAAGTGCTGTTGAGAGTCTTGACTATGAAGTCATAGAGAATTTTGCTTATCGAGAAGAACAGAAGCATAGAAGAAGGAAGCTGTATGTAAGTTACTTGCTGGTGGTGAAATGGTTCTTTGCGTTGCTCATTGGCATTTGTACTGGACTTGCTGCTGTTTTCATCAATATTTCAGTTGAAAATTTTGCTGGCTGGAAGTACTCGATGACATTTAATATAATTCAGAAATCATATGTCGCTGGCTTTATTGTATATATCCTGATCAACTTGGTTTTAGTGTTTTCCTCTGTATATATCATCACACAATTTTCACCAGCAGCTGCCGGATCTGGTATTCCTGAAATCAAGGGTTACTTAAACGGAGTTGATACTCACGGCATCCTTCTTTTCAGAACTTTGATTGGAAAGGTATTTGGAAGCATTGGTTCAGTGGGGGGAGGCCTCGCTTTGGGTAAAGAAGGTCCTCTAGTCCATACTGGTGCTTGTATTGCTTCTTTGCTTGGACAAGGTGGATCCACTAAGTATCATCTAAATTCAAGGTGGTTTAATGTATTCAAAAGTGATCGGGATCGCCGTGATCTTGTAACTTGTGGGTGTGCAGCTGGAGTTGCTGCTGCATTTAGAGCTCCAGTTGGTGGCGTATTGTTTGCATTGGAAGAGGTTACATCTTGGTGGAGGAGTCAACTAATGTGGCGTGTCTTTTTCACTTCTGCTATTGTGGCTGTTGTGGTGCGAACTGCAATGGGGTGGTGTAAGAGTGGAAAATGTGGACATTTTGGATCCGGCGGATTCATAATATGGGATGTGTCAGATGGTCAAGAGGATTACTCGTTTGCAGAGTTGTTTCCAATGGCTATTATTGGGGTTATTGGAGGTCTACTGGGAGCTTTATTTAACCAGCTTACACTTTATATTACTACTTGGCGTCGAAATCATCTTCACAAGAAAGGGAACCGAGTCAAGATTATTGAAGCATGCCTTGTCTCCCTTCTAACATCAGTTATTTCATTTGGCTTGCCGCTTCTAAGAAAATGCAGTCCATGCCCTGAACCTGATCCTGCATCTGGTATTGAATGTCCACGACCTCCTGGAATGTATGGGAATTATGTTAATTTCTATTGTAGCAAAGACAACGAATACAATGACCTTGCTACTATTTTCTTCAATACACAGGATGATGCCATAAGGAACTTGTTCAGTGCAAAAACAATAAACGAGTACAGTTCCCAAAGTTTGTTAACCTTTTTGGTCATGTTTTATTCTTTAGCAGTTGTGACGTTTGGTACTGCCGTGCCTGCTGGTCAATTTGTTCCCGGTATTATGATAGGATCTACATATGGGCGTCTTGTTGGCATGTTTGTTGTAAAATATTACAGAAAACTCAACATTGAAGAGGGAACATATGCTTTGCTAGGAGCTGCATCTTTTCTTGGAGGTTCAATGCGGATGACAGTGTCTCTATGTGTCATTATGGTTGAAATCACAAATAACTTGAAACTTTTACCCCTTATTATGCTCGTTCTTCTTATATCAAAGGCTGTTGGTGATGCTTTTAATGATGGCATATATGAAGAGCAAGCTCGATTGAGAGGCATTCCATTACTTGAATCCAAGCCCAAATATGAGATGCGGAATATGATAGCAAAGGAGGCCTGTGGGAGTGGAAGGGTCACCTCTTTCCCTCGTGTTGTTAAGGTTTCAGATGTATTTTCCATTCTGCAGAGCAACACACACAACGGTTTTCCAGTGATTGAACACACAAGAAGTGGAGAACCACTTGTAATTGGATTAGTGCTTCGGAGTCATTTATTGGTCATTCTGCAGTCTAAGGTTGATTTCCAGCATAGTCCTTTACCCTCTGATCCAAGAGGGGGAGGCAGGTCAATAAGGCATGATTCTGGTGAATTTGCAAAGCCTGTTTCTAGTAAAGGAATATGTCTTGACGATATACATCTAACATCAGAGGACTTGGAAATGTACATAGATCTTGCCCCATTTTTGAACCCCTCACCGTATATTGTACCGGAAGATATGTCTCTGACAAAGGTATACAATCTTTTCCGCCAACTTGGTTTGAGGCATTTATTTGTTGTTCCTCGTCCATCACGTGTTATTGGTTTAATAACCAGAAAAGATTTGTTAATTGAGGACGCAGAAAATGTGAATACATTAGAGCTCCGGGCAACTAGTAACACAGCATCAGGATAA	2331	0.4144	MLANHIQNGIESARVAWSRIPNSDESQFVDEDGVGLVKKNDGSAVESLDYEVIENFAYREEQKHRRRKLYVSYLLVVKWFFALLIGICTGLAAVFINISVENFAGWKYSMTFNIIQKSYVAGFIVYILINLVLVFSSVYIITQFSPAAAGSGIPEIKGYLNGVDTHGILLFRTLIGKVFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLNSRWFNVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRTAMGWCKSGKCGHFGSGGFIIWDVSDGQEDYSFAELFPMAIIGVIGGLLGALFNQLTLYITTWRRNHLHKKGNRVKIIEACLVSLLTSVISFGLPLLRKCSPCPEPDPASGIECPRPPGMYGNYVNFYCSKDNEYNDLATIFFNTQDDAIRNLFSAKTINEYSSQSLLTFLVMFYSLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGMFVVKYYRKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNDGIYEEQARLRGIPLLESKPKYEMRNMIAKEACGSGRVTSFPRVVKVSDVFSILQSNTHNGFPVIEHTRSGEPLVIGLVLRSHLLVILQSKVDFQHSPLPSDPRGGGRSIRHDSGEFAKPVSSKGICLDDIHLTSEDLEMYIDLAPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVIGLITRKDLLIEDAENVNTLELRATSNTASG	776

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre10g00084	776	Gene3D	-	597	761	IPR046342	-
	Trre10g00084	776	FunFam	Chloride channel ClC3	70	387	-	-
	Trre10g00084	776	PANTHER	CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER	35	759	-	-
	Trre10g00084	776	CDD	ClC_6_like	46	576	-	-
	Trre10g00084	776	CDD	CBS_pair_voltage-gated_CLC_euk_bac	598	755	-	-
	Trre10g00084	776	Pfam	CBS domain	709	756	IPR000644	-
	Trre10g00084	776	PRINTS	Plant CLC chloride channel signature	294	301	IPR002251	GO:0005247\|GO:0006821\|GO:0016020
	Trre10g00084	776	PRINTS	Plant CLC chloride channel signature	424	440	IPR002251	GO:0005247\|GO:0006821\|GO:0016020
	Trre10g00084	776	PRINTS	Plant CLC chloride channel signature	262	270	IPR002251	GO:0005247\|GO:0006821\|GO:0016020
	Trre10g00084	776	PRINTS	Plant CLC chloride channel signature	51	59	IPR002251	GO:0005247\|GO:0006821\|GO:0016020

Showing 1 to 10 of 26 entries

Previous1 2 3Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre10g00084	Trre-Chr10	616053	626219	Tandem

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre10g00084	1	774	Ion Channels	AT5G26240	82.817	0.0	1242

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre10g00084	K05016		-	gmx:100811908	1412.9

Showing 1 to 1 of 1 entries