Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00083 ATGCTGGCGAATCATATCCAAAACGGCATCGAATCGGCGAGGGTAGCTTGGTCACGGATTCCGAACTCCGATGAATCACAGTTCGTTGATGAAGACGGCGTTGGTCTTGTTAAGAAGAACGATGGAAGTGCTGTTGAGAGTCTTGACTATGAAGTCATAGAGAATTTTGCTTATCGAGAAGAACAGAAGCATAGAAGAAGGAAGCTGTATGTAAGTTACTTGCTGGTGGTGAAATGGTTCTTTGCGTTGCTCATTGGCATTTGTACTGGACTTGCTGCTGTTTTCATCAATATTTCAGTTGAAAATTTTGCTGGCTGGAAGTACTCGATGACATTTAATATAATTCAGAAATCATATGTCGCTGGCTTTATTGTATATATCCTGATCAACTTGGTTTTAGTGTTTTCCTCTGTATATATCATCACACAATTTTCACCAGCAGCTGCCGGATCTGGTATTCCTGAAATCAAGGGTTACTTAAACGGAGTTGATACTCACGGCATCCTTCTTTTCAGAACTTTGATTGGAAAGGTATTTGGAAGCATTGGTTCAGTGGGGGGAGGCCTCGCTTTGGGTAAAGAAGGTCCTCTAGTCCATACTGGTGCTTGTATTGCTTCTTTGCTTGGACAAGGTGGATCCACTAAGTATCATCTAAATTCAAGGTGGTTTAATGTATTCAAAAGTGATCGGGATCGCCGTGATCTTGTAACTTGTGGGTGTGCAGCTGGAGTTGCTGCTGCATTTAGAGCTCCAGTTGGTGGCGTATTGTTTGCATTGGAAGAGGTTACATCTTGGTGGAGGAGTCAACTAATGTGGCGTGTCTTTTTCACTTCTGCTATTGTGGCTGTTGTGGTGCGAACTGCAATGGGGTGGTGTAAGAGTGGAAAATGTGGACATTTTGGATCCGGCGGATTCATAATATGGGATGTGTCAGATGGTCAAGAGGATTACTCGTTTGCAGAGTTGTTTCCAATGGCTATTATTGGGGTTATTGGAGGTCTACTGGGAGCTTTATTTAACCAGCTTACACTTTATATTACTACTTGGCGTCGAAATCATCTTCACAAGAAAGGGAACCGAGTCAAGATTATTGAAGCATGCCTTGTCTCCCTTCTAACATCAGTTATTTCATTTGGCTTGCCGCTTCTAAGAAAATGCAGTCCATGCCCTGAACCTGATCCTGCATCTGGTATTGAATGTCCACGACCTCCTGGAATGTATGGGAATTATGTTAATTTCTATTGTAGCAAAGACAACGAATACAATGACCTTGCTACTATTTTCTTCAATACACAGGATGATGCCATAAGGAACTTGTTCAGTGCAAAAACAATAAACGAGTACAGTTCCCAAAGTTTGTTAACCTTTTTGGTCATGTTTTATTCTTTAGCAGTTGTGACGTTTGGTACTGCCGTGCCTGCTGGTCAATTTGTTCCCGGTATTATGATAGGATCTACATATGGGCGTCTTGTTGGCATGTTTGTTGTAAAATATTACAGAAAACTCAACATTGAAGAGGGAACATATGCTTTGCTAGGAGCTGCATCTTTTCTTGGAGGTTCAATGCGGATGACAGTGTCTCTATGTGTCATTATGGTTGAAATCACAAATAACTTGAAACTTTTACCCCTTATTATGCTCGTTCTTCTTATATCAAAGGCTGTTGGTGATGCTTTTAATGATGGCATATATGAAGAGCAAGCTCGATTGAGAGGCATTCCATTACTTGAATCCAAGCCCAAATATGAGATGCGGAATATGATAGCAAAGGAGGCCTGTGGGAGTGGAAGGGTCACCTCTTTCCCTCGTGTTGTTAAGGTTTCAGATGTATTTTCCATTCTGCAGAGCAACACACACAACGGTTTTCCAGTGATTGAACACACAAGAAGTGGAGAACCACTTGTAATTGGATTAGTGCTTCGGAGTCATTTATTGGTCATTCTGCAGTCTAAGGTTGATTTCCAGCATAGTCCTTTACCCTCTGATCCAAGAGGGGGAGGCAGGTCAATAAGGCATGATTCTGGTGAATTTGCAAAGCCTGTTTCTAGTAAAGGAATATGTCTTGACGATATACATCTAACATCAGAGGACTTGGAAATGTACATAGATCTTGCCCCATTTTTGAACCCCTCACCGTATATTGTACCGGAAGATATGTCTCTGACAAAGGTATACAATCTTTTCCGCCAACTTGGTTTGAGGCATTTATTTGTTGTTCCTCGTCCATCACGTGTTATTGGTTTAATAACCAGAAAAGATTTGTTAATTGAGGACGCAGAAAATGTGAATACATTAGAGCTCCGGGCAACTAGTGTAAGAACACAGCATCAGGATAAAAGATTGACTGCAAGGAATGCAGATGTGGAGCGCCCTTTGCTGAATGGACTTCTGGCTTAG 2397 0.4164 MLANHIQNGIESARVAWSRIPNSDESQFVDEDGVGLVKKNDGSAVESLDYEVIENFAYREEQKHRRRKLYVSYLLVVKWFFALLIGICTGLAAVFINISVENFAGWKYSMTFNIIQKSYVAGFIVYILINLVLVFSSVYIITQFSPAAAGSGIPEIKGYLNGVDTHGILLFRTLIGKVFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLNSRWFNVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRTAMGWCKSGKCGHFGSGGFIIWDVSDGQEDYSFAELFPMAIIGVIGGLLGALFNQLTLYITTWRRNHLHKKGNRVKIIEACLVSLLTSVISFGLPLLRKCSPCPEPDPASGIECPRPPGMYGNYVNFYCSKDNEYNDLATIFFNTQDDAIRNLFSAKTINEYSSQSLLTFLVMFYSLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGMFVVKYYRKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNDGIYEEQARLRGIPLLESKPKYEMRNMIAKEACGSGRVTSFPRVVKVSDVFSILQSNTHNGFPVIEHTRSGEPLVIGLVLRSHLLVILQSKVDFQHSPLPSDPRGGGRSIRHDSGEFAKPVSSKGICLDDIHLTSEDLEMYIDLAPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVIGLITRKDLLIEDAENVNTLELRATSVRTQHQDKRLTARNADVERPLLNGLLA 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00083 798 FunFam Chloride channel ClC3 70 387 - -
Trre10g00083 798 Gene3D - 597 761 IPR046342 -
Trre10g00083 798 CDD ClC_6_like 46 576 - -
Trre10g00083 798 CDD CBS_pair_voltage-gated_CLC_euk_bac 598 755 - -
Trre10g00083 798 Gene3D Clc chloride channel 71 577 - -
Trre10g00083 798 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 35 761 - -
Trre10g00083 798 FunFam Chloride channel protein 700 791 - -
Trre10g00083 798 PRINTS Chloride channel signature 146 163 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre10g00083 798 PRINTS Chloride channel signature 177 196 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre10g00083 798 PRINTS Chloride channel signature 563 577 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre10g00083 798 PRINTS Chloride channel signature 525 544 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre10g00083 798 PRINTS Chloride channel signature 472 492 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre10g00083 798 PRINTS Chloride channel signature 241 260 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre10g00083 798 PRINTS Chloride channel signature 507 523 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre10g00083 798 PRINTS Plant CLC chloride channel signature 294 301 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre10g00083 798 PRINTS Plant CLC chloride channel signature 424 440 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre10g00083 798 PRINTS Plant CLC chloride channel signature 51 59 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre10g00083 798 PRINTS Plant CLC chloride channel signature 262 270 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre10g00083 798 PRINTS Plant CLC chloride channel signature 276 286 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre10g00083 798 ProSiteProfiles CBS domain profile. 708 765 IPR000644 -
Trre10g00083 798 SUPERFAMILY CBS-domain pair 581 755 IPR046342 -
Trre10g00083 798 Pfam Voltage gated chloride channel 134 556 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre10g00083 798 SUPERFAMILY Clc chloride channel 61 578 IPR014743 -
Trre10g00083 798 SMART cbs_1 711 759 IPR000644 -
Trre10g00083 798 SMART cbs_1 597 649 IPR000644 -
Trre10g00083 798 Pfam CBS domain 709 756 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00083 Trre-Chr10 616053 626280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00083 1 774 Ion Channels AT5G26240 82.946 0.0 1245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00083 K05016 - gmx:100811908 1447.18