Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00076 ATGGAACAAGCACTTATCGGTGCACTCAACCTTGTATCTCGAAATCTTCCTCTTCCTCCCGAACTCTTCAACACCGTTTCTTCTATCTGTTACGGATCTGAACCCAAACCCCTCCCTCTCAACTCCGATGTTGATGCGAGCAATTCTACTCAAGATGATGATTTATTGACAGAGCTTCAAGATGCTTTGTCTAAACAACGACCTAATTGTTCTTCAAGTTCTAAATTAAATAAAGCAATGCAAATTCGTACTCAATCTCGGATTCAGAATCGTTTAACTCAGCTTGAAGGGTTGCCTTCGAACTGGGGAGACAACCTGCAGACGAAGTGCTTGCTCGAGCTTTATGGACTAAAGCTAGCGGAGTTGCAAGGGAAGGTTCGAATGGAAGTGAATTCTGAATATTGGCTTAATGTTAAATGTGCATATCCCGACAAGCAATTGTTTGACTGGGGCATGATGCGGTTGCGGCGTCCTCCTTATGGTGTTGGAGATCCATTTGCCACGGATGCTGATGATAAAATAAGGAAGAAGCGGGATGCTGAGAGACTATCTAGATTAGAAGAGCAAGCTAAAAGTAACATAGAGACCAGAACAAGAAGATTTTTTGCTGAAATACTGAATGCTGTCCGCGAGTTCCAGTTGCAAATTCAAGGTTCATTGAAGAGGAGAAAACAGAGGAATGATGCTGTTCAGGCATGGCATGGAAGACAAAGACAACGTGCAACTCGGGCTGAGAAATTGAGATTCCAAGCTTTAAAGGCTGATGATCAGGAAGCTTACATGAGAATGGTGAAAGAGAGTAAAAATGAAAGACTAACTCTGCTTCTTGAAGAAACAAATAAATTGCTTGTAAATTTGGGAGCAGCGGTTCAACGTCAAAGAGACTCCAAACAATCAAATGGTATTGAACCCTTGGAAGATTCAGTAGCTGCGTTACCACAGTCAGATGCTTTGAAGAATGAAATTTCTAAGGAATCACCTCTTGAGGATGATGAGGATTTGATGGATTCTGATCATAATGATGACAGTAGTGATTTACTTGAAGGTCAACGGCAATACAATTCTGCCATACATTCCATTCAAGAAAAGGTAACTGAGCAACCATCTATCCTTCAAGGTGGAGAATTAAGACCATACCAGATAGAAGGGCTCCAGTGGATGCTTTCTTTGTTCAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGAAAGACAATACAAACCATTTCATTGATAGCATATCTTTTGGAATACAAGGGTGTGACTGGCCCTTTTTTGATTGTAGCCCCAAAGGCTGTTCTGCCAAATTGGGTCAATGAGTTCTCAACATGGGCTCCTAGCATTACAGCTGTTCTATACGACGGACGAATGGATGAGAGGAAAGCAATAAAGGAAGAACTGTCAGGGGAGGGGAAATTTAATGTTCTGATAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTGAAGAAAATCTATTGGAAATACTTGATTGTTGATGAAGGGCATCGATTGAAGAATCATGAGTGTGCTCTAGCAAGAACCCTTGACTCTAGCTATCAAATTGAACGAAGACTTCTGTTGACTGGAACTCCAATTCAGAACAGCCTGCAGGAATTGTGGTCCCTGCTCAATTTTCTTCTCCCAAACATTTTCAATTCAGTTCAGAATTTCGAGGACTGGTTTAATGCTCCCTTTGCTGATCGAGTTGATGTGTCCTTAACAGATGAAGAACAACTATTGATTATTCGCCGTTTGCATCAGGTAATAAGGCCCTTCATACTAAGAAGGAAAAAGGCTGAGGTAGAGAAGTTTCTTCCCGGGAAATCTCAGGTCATACTCAAATGTGACATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTGACTGACGTGGGCAGAGTTGGGTTAGACAATGGTACTGGAAAATCAAAAAGTCTACAGAACTTGACAATGCAACTCAGGAAGTGTTGTAACCATCCATACCTCTTTGTGGGAAACTATGATATATATAATCGTAAGGAGGAGATTGTCAGAGCATCGGGCAAATTTGAACTTCTTGACCGCTTGCTTCCTAAACTTCGTAGAGCTGGTCATAGAGTCCTCCTTTTTTCACAAATGACTCGTCTCATGGACATTCTTGAAATTTATCTTCAACTTCATGATTATAAATTTCTTAGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGCTCCCTTCTAAAGAAATTCAATGCTCCCGACTCTCCATACTTTATGTTTCTCTTAAGCACTCGTGCCGGAGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATCTTTGACAGTGATTGGAATCCACAAATGGATCAACAAGCTGAGGATCGAGCCCATCGCATTGGACAAAAGAAAGAAGTTAGAGTTTTTGTGTTAGTTAGTGTGGGATCAATTGAAGAGGTGATTTTAGAACGTGCTAAACAAAAGATGGGAATTGATGCCAAAGTCATCCAGGCAGGCCTTTTCAACACAACGTCAACAGCCCAGGACAGGAGAGAAATGTTGGAGGAGATTATGCGTAGAGGTAGTAGCTCACTTGGAACAGATGTGCCAAGTGAGAGAGAAATTAACCGCCTTGCAGCCCGGTCCGATGAGGAATTTTGGCTGTTCGAAAGAATGGACGAAGATAGAAGGCAAAAGGAGAACTACAGATCTCGTCTCATGACAGAGCATGAACTGCCAGATTGGGTATACTCTGACCTAAATAAGGATGATAAGGCCAAAGCTTTTGACAGCAGTGGTATTACTGGAAAGAGGAAAAGAAAAGAAGTCGTATATGCAGATACATTAAGCGATCTACAATGGATGAAGGCTGTGGAAAGTGGACAGGATGTATCTAATCTTTCAGCTAAAGGAAAACGAAGAGTTCGCTTCCCTATTGACAGCCATGCGCAAACCAGTGATGACACCGGGGAAGAAGAAAGGTTGTTACAGTTGAGCAACACCGTGGCAAATGAGAGATCTGGTGAAGATACTTTCAATGCGACCCCTACCTCTAAGAGACTCAAGTATGAAGAAATAAGTTCCCATAAACATGGAATCGAAGATATCGGAGGAAGTGGTTTGAATGAGCATGCACTTTCCTGGAATACTCACAGAAAGAAGAGATCAAGCTATCTTAGTCAGGGTTCATTATCCGATACCAGAGGGCAGAATCCAAATGGAAGAAGAGCAAGCTAA 3234 0.4153 MEQALIGALNLVSRNLPLPPELFNTVSSICYGSEPKPLPLNSDVDASNSTQDDDLLTELQDALSKQRPNCSSSSKLNKAMQIRTQSRIQNRLTQLEGLPSNWGDNLQTKCLLELYGLKLAELQGKVRMEVNSEYWLNVKCAYPDKQLFDWGMMRLRRPPYGVGDPFATDADDKIRKKRDAERLSRLEEQAKSNIETRTRRFFAEILNAVREFQLQIQGSLKRRKQRNDAVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQRDSKQSNGIEPLEDSVAALPQSDALKNEISKESPLEDDEDLMDSDHNDDSSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLLEYKGVTGPFLIVAPKAVLPNWVNEFSTWAPSITAVLYDGRMDERKAIKEELSGEGKFNVLITHYDLIMRDKAFLKKIYWKYLIVDEGHRLKNHECALARTLDSSYQIERRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKAEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGTGKSKSLQNLTMQLRKCCNHPYLFVGNYDIYNRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLQLHDYKFLRLDGSTKTEERGSLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGSSSLGTDVPSEREINRLAARSDEEFWLFERMDEDRRQKENYRSRLMTEHELPDWVYSDLNKDDKAKAFDSSGITGKRKRKEVVYADTLSDLQWMKAVESGQDVSNLSAKGKRRVRFPIDSHAQTSDDTGEEERLLQLSNTVANERSGEDTFNATPTSKRLKYEEISSHKHGIEDIGGSGLNEHALSWNTHRKKRSSYLSQGSLSDTRGQNPNGRRAS 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00076 1077 MobiDBLite consensus disorder prediction 1051 1077 - -
Trre10g00076 1077 MobiDBLite consensus disorder prediction 1002 1021 - -
Trre10g00076 1077 FunFam Probable ATP-dependent DNA helicase CHR12 607 906 - -
Trre10g00076 1077 Gene3D - 344 600 IPR038718 -
Trre10g00076 1077 Gene3D - 607 906 IPR027417 -
Trre10g00076 1077 MobiDBLite consensus disorder prediction 293 346 - -
Trre10g00076 1077 FunFam Chromatin structure-remodeling complex protein SYD 367 610 - -
Trre10g00076 1077 CDD SF2_C_SNF 678 811 - -
Trre10g00076 1077 SMART helicmild6 716 800 IPR001650 -
Trre10g00076 1077 Pfam SNF2-related domain 379 667 IPR000330 GO:0005524|GO:0140658
Trre10g00076 1077 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 388 554 IPR014001 -
Trre10g00076 1077 MobiDBLite consensus disorder prediction 1030 1077 - -
Trre10g00076 1077 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 690 857 IPR001650 -
Trre10g00076 1077 PANTHER SNF2/RAD54 HELICASE FAMILY 170 986 - -
Trre10g00076 1077 SMART SnAC_2 893 954 IPR029295 GO:0042393
Trre10g00076 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 603 855 IPR027417 -
Trre10g00076 1077 SMART ultradead3 372 565 IPR014001 -
Trre10g00076 1077 MobiDBLite consensus disorder prediction 1002 1020 - -
Trre10g00076 1077 Pfam Snf2-ATP coupling, chromatin remodelling complex 889 954 IPR029295 GO:0042393
Trre10g00076 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 601 IPR027417 -
Trre10g00076 1077 Pfam Helicase conserved C-terminal domain 687 800 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00076 Trre-Chr10 567108 574489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00076 683 828 RAD5 or RAD16-like Gene Family AT5G43530 37.333 6.14e-21 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre10g00076 SNF2_N 1.5e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00076 - - gmx:100775993 1761.89