Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00075 ATGCTTTTTCTCATCTTCATTTTCCTCTTCTTTCTCTTCAAACCATGGCGCTTCTTTTTCTCTTCGCGTTCCTCTCGCTCTTCCAACAACAACAAGGGTTTTATTGGTAGTGAATTAGAGAGACCACTTGTTGAAGACGATGTAGTAAATGCTAATCAGCATAATGAATTACCTAGAGATTATGATCTTGAAGGTGTTGTTGGTGGTGATACTTTGATTGTTGATGTTATCTCTGATCATCATCATTCTGAAGATATTCATGTTGATGTTGATGTTGATGTTGATGTTGGTCAAGTATTTAAGCTACCTCCTCCACCTCTTTTAGCTCAAATTCAAAAACCTAACAGTAATTATCAGAATGATAGATTGCAAGATTTTGTGCAAAGAGATATCACTGATCAAAGAAGTTGCCTCACTTTGGAGGTTATCAGTGGTCCTTCCTGCGGATTACGATGTTCTGTACAGTCGACGAATCCCTCTCGTCTACCGTTGACATTGGGTAGGGTTTCTCCCAGTGATTTGTTGATAAAGGACTCGGAAGTTTCGGGAAAGCATGCTTTGATCAAGTGGAATTTGGATAATATGAAATGGGAGTTGGTGGACATGGGTAGCTTGAATGGAACACTTTTGAATTCTAAGTCAATCAACCATCCTGACACTGGAAGTAGGCATTGGGGAGATCCAATGAATCTTGCTAATGGAGATGTTATAACTCTTGGAACAACATCAAAAATAATTGTTCATATTACTTCACAAAACCCTCATCACATTCCCTTTGGAGTTGGTATGGCATCAGATCCCATGGCTTTGCGTCGAGGAGGGAAAAAACTTCCTATGGAGGATGTTTGCTATTATCAATGGCCTCTACCTGGACTGGATCAGTTTGGTCTTTTTAGCATTTGTGATGGGCACGGTGGTGACGGGGCTGCCAAATCTGCTAGCAAACTCTTTCCTGAGATAATTGCCAGTATATTATCGGATTCATCAAAAAGGGAGAGGGTTTTATCACTTCGTGATGCTTCAGATATCCTTCGAGATGCATTTTCTCAAACAGAAGCACGTATGAATAATTATTATGAGGGATGTACAGCAACAGTGCTTCTGGTGTGGGCTGACCGTGATGATAATTTCTATGCACAATGTGCAAATGTTGGAGACTCTGAATGCATTATGAGTGTTAATGGCCAACAAATCAAGATGACAGAGGATCACAAGATAGCGAATTATTCCGAAAGACTAAGAATTGAAGGGACCGGTGAACCATTAAAAGAGGGGGAAACCCGACTATATGGTATAAATCTTGCAAGGATGCTTGGGGACAAATTCCTAAAGCAGCAGGATTCCCGATTCAGTTCTGAACCTTATATAAGTGAGCCCATCCATATTCACCCAGGAAGCAAGGCTTTTGTTGTTCTAGCTAGTGATGGGCTATGGGACGTCGTCAGCGTGAAGAAGGCGATTCAGCTAGTGCTCCAGACGAGGGAGCGATACAATACAGATAGAGAGAATACAGCAGAAAAGATTGCTAGTTTGTTGTTGAGTGAGGCTAGAACACTCAAAACAAAGGATAATACCTCCATAATATTCTTAGATTTTGATACCTTCAATAGTTTCTCTTGTAAAGTTGAATCCTAG 1635 0.4061 MLFLIFIFLFFLFKPWRFFFSSRSSRSSNNNKGFIGSELERPLVEDDVVNANQHNELPRDYDLEGVVGGDTLIVDVISDHHHSEDIHVDVDVDVDVGQVFKLPPPPLLAQIQKPNSNYQNDRLQDFVQRDITDQRSCLTLEVISGPSCGLRCSVQSTNPSRLPLTLGRVSPSDLLIKDSEVSGKHALIKWNLDNMKWELVDMGSLNGTLLNSKSINHPDTGSRHWGDPMNLANGDVITLGTTSKIIVHITSQNPHHIPFGVGMASDPMALRRGGKKLPMEDVCYYQWPLPGLDQFGLFSICDGHGGDGAAKSASKLFPEIIASILSDSSKRERVLSLRDASDILRDAFSQTEARMNNYYEGCTATVLLVWADRDDNFYAQCANVGDSECIMSVNGQQIKMTEDHKIANYSERLRIEGTGEPLKEGETRLYGINLARMLGDKFLKQQDSRFSSEPYISEPIHIHPGSKAFVVLASDGLWDVVSVKKAIQLVLQTRERYNTDRENTAEKIASLLLSEARTLKTKDNTSIIFLDFDTFNSFSCKVES 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00075 544 ProSiteProfiles Forkhead-associated (FHA) domain profile. 164 215 IPR000253 GO:0005515
Trre10g00075 544 Gene3D - 132 264 - -
Trre10g00075 544 Gene3D - 265 538 IPR036457 -
Trre10g00075 544 CDD FHA_PP2C70-like 138 248 - -
Trre10g00075 544 SUPERFAMILY SMAD/FHA domain 136 247 IPR008984 GO:0005515
Trre10g00075 544 ProSiteProfiles PPM-type phosphatase domain profile. 260 532 IPR001932 -
Trre10g00075 544 ProSitePatterns PPM-type phosphatase domain signature. 297 305 IPR000222 GO:0043169
Trre10g00075 544 SUPERFAMILY PP2C-like 273 533 IPR036457 -
Trre10g00075 544 SMART PP2C_4 254 530 IPR001932 -
Trre10g00075 544 Pfam FHA domain 165 240 IPR000253 GO:0005515
Trre10g00075 544 FunFam Protein phosphatase 2C 70 268 539 - -
Trre10g00075 544 PANTHER PROTEIN PHOSPHATASE 2C 271 528 IPR015655 GO:0004722|GO:0006470
Trre10g00075 544 Pfam Protein phosphatase 2C 271 525 IPR001932 -
Trre10g00075 544 CDD PP2Cc 272 532 IPR001932 -
Trre10g00075 544 SMART FHA_2 163 215 IPR000253 GO:0005515
Trre10g00075 544 FunFam Protein phosphatase 2C 70 133 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00075 Trre-Chr10 559388 564815 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00075 11 534 PP2C-type Phosphatase Gene Family AT5G19280 55.379 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00075 K01090 - gmx:100170643 783.097