Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00074 ATGGAACATACGATGCTTCAAACCATTGTGACTGTGCTTCTTCTCCTTATGCTTTTTCTCATCTTCATTTTCCTCTTCTTTCTCTTCAAACCATGGCGCTTCTTTTTCTCTTCGCGTTCCTCTCGCTCTTCCAACAACAACAAGGGTTTTATTGGTAGTGAATTAGAGAGACCACTTGTTGAAGACGATGTAGTAAATGCTAATCAGCATAATGAATTACCTAGAGATTATGATCTTGAAGGTGCGTGTTATCCTAATGAACTTAATTTTCGTTCTCCAAGAACACATGGACAAGGACTTATTCATAAACAAAGGCTTCATAATCACTCTGTTTCACCTAATTTTCCACAAGGTGTTGTTGGTGGTGATACTTTGATTGTTGATGTTATCTCTGATCATCATCATTCTGAAGATATTCATGTTGATGTTGATGTTGATGTTGATGTTGGTCAAGTATTTAAGCTACCTCCTCCACCTCTTTTAGCTCAAATTCAAAAACCTAACAGTAATTATCAGAATGATAGATTGCAAGATTTTGTGCAAAGAGATATCACTGATCAAAGAAGTTGCCTCACTTTGGAGGTTATCAGTGGTCCTTCCTGCGGATTACGATGTTCTGTACAGTCGACGAATCCCTCTCGTCTACCGTTGACATTGGGTAGGGTTTCTCCCAGTGATTTGTTGATAAAGGACTCGGAAGTTTCGGGAAAGCATGCTTTGATCAAGTGGAATTTGGATAATATGAAATGGGAGTTGGTGGACATGGGTAGCTTGAATGGAACACTTTTGAATTCTAAGTCAATCAACCATCCTGACACTGGAAGTAGGCATTGGGGAGATCCAATGAATCTTGCTAATGGAGATGTTATAACTCTTGGAACAACATCAAAAATAATTGTTCATATTACTTCACAAAACCCTCATCACATTCCCTTTGGAGTTGGTATGGCATCAGATCCCATGGCTTTGCGTCGAGGAGGGAAAAAACTTCCTATGGAGGATGTTTGCTATTATCAATGGCCTCTACCTGGACTGGATCAGTTTGGTCTTTTTAGCATTTGTGATGGGCACGGTGGTGACGGGGCTGCCAAATCTGCTAGCAAACTCTTTCCTGAGATAATTGCCAGTATATTATCGGATTCATCAAAAAGGGAGAGGGTTTTATCACTTCGTGATGCTTCAGATATCCTTCGAGATGCATTTTCTCAAACAGAAGCACGTATGAATAATTATTATGAGGGATGTACAGCAACAGTGCTTCTGGTGTGGGCTGACCGTGATGATAATTTCTATGCACAATGTGCAAATGTTGGAGACTCTGAATGCATTATGAGTGTTAATGGCCAACAAATCAAGATGACAGAGGATCACAAGATAGCGAATTATTCCGAAAGACTAAGAATTGAAGGGACCGGTGAACCATTAAAAGAGGGGGAAACCCGACTATATGGTATAAATCTTGCAAGGATGCTTGGGGACAAATTCCTAAAGCAGCAGGATTCCCGATTCAGTTCTGAACCTTATATAAGTGAGCCCATCCATATTCACCCAGGAAGCAAGGCTTTTGTTGTTCTAGCTAGTGATGGGCTATGGGACGTCGTCAGCGTGAAGAAGGCGATTCAGCTAGTGCTCCAGACGAGGGAGCGATACAATACAGATAGAGAGAATACAGCAGAAAAGATTGCTAGTTTGTTGTTGAGTGAGGCTAGAACACTCAAAACAAAGGATAATACCTCCATAATATTCTTAGATTTTGATACCTTCAATAGTTTCTCTTGTAAAGTTGAATCCTAG 1794 0.4036 MEHTMLQTIVTVLLLLMLFLIFIFLFFLFKPWRFFFSSRSSRSSNNNKGFIGSELERPLVEDDVVNANQHNELPRDYDLEGACYPNELNFRSPRTHGQGLIHKQRLHNHSVSPNFPQGVVGGDTLIVDVISDHHHSEDIHVDVDVDVDVGQVFKLPPPPLLAQIQKPNSNYQNDRLQDFVQRDITDQRSCLTLEVISGPSCGLRCSVQSTNPSRLPLTLGRVSPSDLLIKDSEVSGKHALIKWNLDNMKWELVDMGSLNGTLLNSKSINHPDTGSRHWGDPMNLANGDVITLGTTSKIIVHITSQNPHHIPFGVGMASDPMALRRGGKKLPMEDVCYYQWPLPGLDQFGLFSICDGHGGDGAAKSASKLFPEIIASILSDSSKRERVLSLRDASDILRDAFSQTEARMNNYYEGCTATVLLVWADRDDNFYAQCANVGDSECIMSVNGQQIKMTEDHKIANYSERLRIEGTGEPLKEGETRLYGINLARMLGDKFLKQQDSRFSSEPYISEPIHIHPGSKAFVVLASDGLWDVVSVKKAIQLVLQTRERYNTDRENTAEKIASLLLSEARTLKTKDNTSIIFLDFDTFNSFSCKVES 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00074 597 PANTHER PROTEIN PHOSPHATASE 2C 324 581 IPR015655 GO:0004722|GO:0006470
Trre10g00074 597 CDD FHA_PP2C70-like 191 301 - -
Trre10g00074 597 SMART PP2C_4 307 583 IPR001932 -
Trre10g00074 597 Pfam FHA domain 218 293 IPR000253 GO:0005515
Trre10g00074 597 Pfam Protein phosphatase 2C 324 578 IPR001932 -
Trre10g00074 597 ProSiteProfiles PPM-type phosphatase domain profile. 313 585 IPR001932 -
Trre10g00074 597 FunFam Protein phosphatase 2C 70 186 320 - -
Trre10g00074 597 Gene3D - 318 591 IPR036457 -
Trre10g00074 597 Gene3D - 185 317 - -
Trre10g00074 597 ProSitePatterns PPM-type phosphatase domain signature. 350 358 IPR000222 GO:0043169
Trre10g00074 597 CDD PP2Cc 325 585 IPR001932 -
Trre10g00074 597 SMART FHA_2 216 268 IPR000253 GO:0005515
Trre10g00074 597 FunFam Protein phosphatase 2C 70 321 592 - -
Trre10g00074 597 SUPERFAMILY PP2C-like 326 586 IPR036457 -
Trre10g00074 597 ProSiteProfiles Forkhead-associated (FHA) domain profile. 217 268 IPR000253 GO:0005515
Trre10g00074 597 SUPERFAMILY SMAD/FHA domain 189 300 IPR008984 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00074 Trre-Chr10 559340 564815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00074 27 587 PP2C-type Phosphatase Gene Family AT5G19280 56.239 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00074 K01090 - gmx:100170643 843.958