Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00070 ATGTTTGGTTCTTCTTCCCAACACAAACACATTATGGATAATATGTTTTTTGAAGATGAGGTGCCAAGGGCAAGAGATGAACGTTACCAAATTGAATTTGGAGGTTCATCAAGACCAAGTGATGAACAACAACAACAACAACAAGAACAACCAAACCAACATGAACAACAACCCAACCAATGTTCCAAAAAAAGGAGCTATCGCCGCCACACACAGGAGCAAATCGAAGAACTGGATGCTTTCTTCAAGCGGAATGCTCACCCAGATGAGAGGGAAAGAAAAGAGTTGGGACGTCGGCTTGGGTTAGATCCTTCGCAAATCAAGTTCTGGTTTCAAAACAGACGCACCGGTCTAAAGGTGCGAAGTGAAAGAGAAGAGAATGATTTTTTAAAGGCAGAGATTGAAAAGCTTCGAGCCGAGTTGAATAGGTTCAAAGAGACTCCAACTACATGCAACGTGTGTGGAACTCCGACTACCCTTGTGATGTCCAATGAGCAGCAACAATTGAGATTGGAGAATGCTTTGTTAAAAAAAGAGCTTGAAAGATTTGGAGCCCAAATATTGACAAATCATGGCGATTCCTATAACAACATATCATCAGTATTGAATAGCAATCAAGGACCTTCACATTCTGTTGATGTTGGTCTTGGAGTTGAACTTGTTGGTAACTACAATGGAGCAATGAAAGGTTTTGTAGGAGAAACAAATGTTGGTGGTAGTGGCACTGGTCGTGAGCTTATTAGATACTCTGCTCTAGCTGAAGGTCTTGATGATAACAAGATTGTTGAGTTAGCAGTTGTAGGAATGGATGAACTAATAAGATTGGATCAGACTTGTGGACCTCCTATGTGGTTCTCCACCAATTATCTTACTGAGATTTTAAATGGAGAGGAATATATGTTGCAATTTCCTCGGAGTATTGTTCCCAACCAAATGGAGTTAAGACATGATGGTTCTAAAGAATCGGTTGTGGTTTTCATGAATCCTATTAGTTTGGTTGATATCCTTATGGATGCGAGTCGATGGTCAAATATGTTTTGCGGAATTGTTTCAAGAGCTGCAACACTCAAAGTCCTTTCAACTGGAGTGGCAGGAAATTATGACGGAGCCTTGCAAGTGATGTCAGCTGAATTTCAGGTTGCTTCACCATCAATTCCTACTCTTGAAAGTAATTTCGTGAGATACTGTAAACTTCTTCCAAATCGGATATGGGTAGTGGCTGATGTTCCCTTGAATAATTTTTCGCCTTCATCTAGTAGTTCTATTTCGAGAACAAAAAGAAGAGTTTCTGGTTGTTTAATTCAAGAACTACCACATGGTTACTCTAACGTCACATGGATTGAACATTTAGAAGTTAATGATAATGAGGTACAAACTATATATACACCTCTAATTAATTCTGGACTTGCATTTGGAGCTAAACGTTGGATAGCTATACTACAAAGACAATGCGAACGTCTTGTTTGTTCAATGTCGAGCAACATACCTATTACAGGGAACATTGGTGTGAGTATGACTCATGCGGGAAAGGAAAGTATGTTGAGGTTAGCAGGAAGAATGGTAACCAGCTTCTGTACTAGTATTGGTGCTTCTACGGCTCATGCTTGGACAAATCTACCATCAAACGGGTCCGAGGAAATAAAAGTTATGACTAGAAAATATACTGATGAATCAGGCAGCGACAGACCCTCTGATGTAGTGCTAAGTACTGCTACTTCTTTCTGGCTTCCCATTCCTCCAAAAAGGGTTTTTGAGTTTCTTCGTAACGAAAACTCAAGAAGTCAGTGGGATATTCTCTCCACCGGATGTACAATTGAAGATGTGGCTAACATTGCCAATGGTTGTGATCCTGGCAATTGTGTTTCTTTACTTCGTGTCCGTAGTGGAAATACAAGTCAGAGTAATAGGGTGGTACTACAAGAGAGTTGCACTGATATAACTGGCTCATATGTAGTATATGCACCTGTGGATGTAATTGCAATGAATGCAGTAATATGTGGTGGAGACTCAAATTGTGTTGCTATGATTCCTTCTGGATTTGCTATTCTTCCAGATGGAGGACCAATTATGAATATTGGATCTGGAGGTTCTCTTATCACAGTTGGATTTCAGATTTTAGTTGATTCTGTTCCACATACAAGACTAGCTCTTGGTTCAGTCTCCACTGTTAACAATTTGCTCAAGGCCACTGTGAAAAGAATTAAAGTTGCATTGATGCCTAATGACACCTAA 2232 0.3996 MFGSSSQHKHIMDNMFFEDEVPRARDERYQIEFGGSSRPSDEQQQQQQEQPNQHEQQPNQCSKKRSYRRHTQEQIEELDAFFKRNAHPDERERKELGRRLGLDPSQIKFWFQNRRTGLKVRSEREENDFLKAEIEKLRAELNRFKETPTTCNVCGTPTTLVMSNEQQQLRLENALLKKELERFGAQILTNHGDSYNNISSVLNSNQGPSHSVDVGLGVELVGNYNGAMKGFVGETNVGGSGTGRELIRYSALAEGLDDNKIVELAVVGMDELIRLDQTCGPPMWFSTNYLTEILNGEEYMLQFPRSIVPNQMELRHDGSKESVVVFMNPISLVDILMDASRWSNMFCGIVSRAATLKVLSTGVAGNYDGALQVMSAEFQVASPSIPTLESNFVRYCKLLPNRIWVVADVPLNNFSPSSSSSISRTKRRVSGCLIQELPHGYSNVTWIEHLEVNDNEVQTIYTPLINSGLAFGAKRWIAILQRQCERLVCSMSSNIPITGNIGVSMTHAGKESMLRLAGRMVTSFCTSIGASTAHAWTNLPSNGSEEIKVMTRKYTDESGSDRPSDVVLSTATSFWLPIPPKRVFEFLRNENSRSQWDILSTGCTIEDVANIANGCDPGNCVSLLRVRSGNTSQSNRVVLQESCTDITGSYVVYAPVDVIAMNAVICGGDSNCVAMIPSGFAILPDGGPIMNIGSGGSLITVGFQILVDSVPHTRLALGSVSTVNNLLKATVKRIKVALMPNDT 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00070 743 Pfam START domain 282 486 IPR002913 GO:0008289
Trre10g00070 743 CDD homeodomain 64 115 IPR001356 GO:0003677
Trre10g00070 743 MobiDBLite consensus disorder prediction 13 32 - -
Trre10g00070 743 Coils Coil 166 186 - -
Trre10g00070 743 ProSiteProfiles START domain profile. 282 489 IPR002913 GO:0008289
Trre10g00070 743 Coils Coil 120 147 - -
Trre10g00070 743 SMART HOX_1 63 125 IPR001356 GO:0003677
Trre10g00070 743 Pfam Homeodomain 64 116 IPR001356 GO:0003677
Trre10g00070 743 SMART START_1 263 486 IPR002913 GO:0008289
Trre10g00070 743 MobiDBLite consensus disorder prediction 13 70 - -
Trre10g00070 743 MobiDBLite consensus disorder prediction 36 60 - -
Trre10g00070 743 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 59 738 IPR042160 -
Trre10g00070 743 Gene3D - 58 128 - -
Trre10g00070 743 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Trre10g00070 743 CDD START_ArGLABRA2_like 261 485 - -
Trre10g00070 743 FunFam Homeobox-leucine zipper protein HDG1 44 137 - -
Trre10g00070 743 SUPERFAMILY Bet v1-like 318 486 - -
Trre10g00070 743 SUPERFAMILY Homeodomain-like 50 119 IPR009057 -
Trre10g00070 743 SUPERFAMILY Bet v1-like 508 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00070 Trre-Chr10 492278 497249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00070 24 738 Homeobox Transcription Factor Family AT4G04890 53.741 0.0 756
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre10g00070 START 4e-38 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00070 K09338 - gmx:100815499 768.844