LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre10g00060	ATGGAAACTCTATCCTCAAACATAGTAGCTTCAAACACAAGTTTCTTCAACAATACATCAACAGGAGAAGGACTAGACAAAGTGTATGGACAAGCACTATGCAGAGGTGACATAACAAACTCCACAGTTTGCAAAGAATGCATTGAGAAAGCAAGCAAAGATTTAATGAAAAGGTGTAAGAGTGAAGATGCGATGATATGGTACGACCTTTGTCAAGTTCGGTACTCGTTTCAGATGTTTTTCTCAAATGCGGTTTATACCGGAAAATATCCAAAGCAGAATGATCTAGAGAAGCGCGTCTTGGATCCTACTAGTTTCCAACAAGTGTTGACTTACTTAATGAACAATATCTCAAATGAGGCTGCTTTTAATCATGCTAAGAACATGTTTGCAACTGCGGACATAGAATTTTCTAAGAAGAAAAGGGCGAGAATATATGGACTTGTCGAATGTACGAAGGACATTTCTGAAACGGACTGCAAGAGTTGTTTGAGTTCTGCAATCACAGAACTCAATGCATGCTGCTCATACAGGGAAGGAGGGATTATTGTTAGTCGAAATTGCAACGTTAGATTCGACTTGTCTGAGTTTTTCAATGCTTCTTCATCAGCAGCATCCCTTTTGGTTTTCCCAACTTCCAGAGGAGGGAAATGGAAGCCTTGGATGTTTGTGTTGACTATATGTGGCTCAATTTTGATAATAGCAGTTCTTATTGTGTTTTGCATCGCTTGCCTCCGGCAGAAAAAGGACAGGGAAAAAGATGAAGAAAGAAGCGAAAGGACGCTATTACAAGAGTTGGCTAGCCCCAAGAATGTAGCAATCACCCAAGAAGGTGAGTTGATTAGTTCTGATCAACTGTTCATGACTTTAGCAACCATTAAGGCGGCTACCGGCAACTTTTCTGATACAAATAAGCTTGGACAAGGAGGGTTTGGTACAGTCTACAAGGGTGTTCTACCAGATGGTAATGAAATAGCAGTTAAAAGATTGTCTAGAAAATCTTGGCAGGGCTTAGAAGAATTCAAAAATGAGGTTATTCTAATAGCTAAACTTCAACACAAAAATTTGGTGAAGTTGTTAGGTTGTGTCTTAGAAGGAGAGGAAAAGATACTCATATATGAACTCATGTCAAACAGAAGCCTTGATAAATTTATATTCGATCCATACAAACGTCCTAAACTTGACTGGAAGACATGTTATGGCATCATCGGCGGCTTAGCAAAAGGACTTCTTTATCTGCACGAAGAGTCTCGGCTTAAAATCATTCACCGAGACCTAAAGCCAAACAATGTGTTGTTAGACCATGAACTAGTAGCCAAAATATCAGATTTTGGTATGGCCAGGATGTTTTCTGAGAATCAAAATACAGCAAACACAAAAAGAGTTGTGGGAACACATGGATATATGGCTCCAGAATATGCAATGGAGGGACTATTCTCCGTAAAATCTGATGTCTTCAGCTTTGGCGTAATTATGCTTGAAATCATCAGTGGCAAAAGAAATAACGGCTTTTACACAACCAAACTTGCGCCAACTTTGCTGGCACATGCTTGGCGACTGTGGAACGAGGGAAATGGATTAGAAGTTGTGGATCCTATATTACTAGTATCGTGTCTTGATTCTGAATATGAAGTTCTTAGGTGCGTTCATATCGCGCTCCTGTGTGTGCAGGAAGATCCGCAACACAGGCCGACCATGTCAAATATTGTAGTTCTACTTGGAAGTGAATCAATGACTCTTCCCCAACCAAGACAACCAGCATTTTCATCGGGTAAGGCGATTCACGTAGATCCTACTGCATCAATAAATCATTCAGTGAATGAGAGTCTATGGTCTAGCGTTACACCACGATGA	1854	0.4024	METLSSNIVASNTSFFNNTSTGEGLDKVYGQALCRGDITNSTVCKECIEKASKDLMKRCKSEDAMIWYDLCQVRYSFQMFFSNAVYTGKYPKQNDLEKRVLDPTSFQQVLTYLMNNISNEAAFNHAKNMFATADIEFSKKKRARIYGLVECTKDISETDCKSCLSSAITELNACCSYREGGIIVSRNCNVRFDLSEFFNASSSAASLLVFPTSRGGKWKPWMFVLTICGSILIIAVLIVFCIACLRQKKDREKDEERSERTLLQELASPKNVAITQEGELISSDQLFMTLATIKAATGNFSDTNKLGQGGFGTVYKGVLPDGNEIAVKRLSRKSWQGLEEFKNEVILIAKLQHKNLVKLLGCVLEGEEKILIYELMSNRSLDKFIFDPYKRPKLDWKTCYGIIGGLAKGLLYLHEESRLKIIHRDLKPNNVLLDHELVAKISDFGMARMFSENQNTANTKRVVGTHGYMAPEYAMEGLFSVKSDVFSFGVIMLEIISGKRNNGFYTTKLAPTLLAHAWRLWNEGNGLEVVDPILLVSCLDSEYEVLRCVHIALLCVQEDPQHRPTMSNIVVLLGSESMTLPQPRQPAFSSGKAIHVDPTASINHSVNESLWSSVTPR	617

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre10g00060	617	Pfam	Salt stress response/antifungal	6	77	IPR002902	-
	Trre10g00060	617	Pfam	Salt stress response/antifungal	103	193	IPR002902	-
	Trre10g00060	617	Gene3D	Transferase(Phosphotransferase) domain 1	376	582	-	-
	Trre10g00060	617	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	12	595	-	-
	Trre10g00060	617	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	265	375	-	-
	Trre10g00060	617	ProSiteProfiles	Gnk2-homologous domain profile.	1	80	IPR002902	-
	Trre10g00060	617	ProSiteProfiles	Protein kinase domain profile.	300	588	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g00060	617	Gene3D	-	1	80	IPR038408	-
	Trre10g00060	617	Gene3D	-	91	197	IPR038408	-
	Trre10g00060	617	ProSitePatterns	Protein kinases ATP-binding region signature.	306	328	IPR017441	GO:0005524
	Trre10g00060	617	FunFam	Uncharacterized protein	376	579	-	-
	Trre10g00060	617	SUPERFAMILY	Protein kinase-like (PK-like)	284	572	IPR011009	-
	Trre10g00060	617	SMART	serkin_6	300	573	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g00060	617	ProSiteProfiles	Gnk2-homologous domain profile.	88	197	IPR002902	-
	Trre10g00060	617	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	421	433	IPR008271	GO:0004672\|GO:0006468
	Trre10g00060	617	Gene3D	Phosphorylase Kinase; domain 1	261	375	-	-
	Trre10g00060	617	CDD	STKc_IRAK	306	570	-	-
	Trre10g00060	617	Pfam	Protein tyrosine and serine/threonine kinase	303	571	IPR001245	GO:0004672\|GO:0006468
	Trre10g00060	617	FunFam	Cysteine-rich receptor-like protein kinase 10	91	197	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre10g00060	Trre-Chr10	455625	458129	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre10g00060	1	588	Receptor kinase-like Gene Family	AT4G23230	42.693	2.47e-167	489

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Trre10g00060		PK_Tyr_Ser-Thr	3.4e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre10g00060	-		-	gmx:102669229	876.7