Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00058 ATGTGCAGGGGTGACGTGTCACTCCCTCTCTGCCGACAGTGCGTACTCAACGCAACCCAGACACTATTTTCAGAATGTTCCCTTTCTAAACAGGCAGTGATATGGTACGACGAGTGCACCGTACGCTACTCAAACCGTTCTTTTTTCTCCACCTTTGATACCAGACCTCGTGTTGGTCTACTCAACACAGCAAACATAACCAACCAAAAAAGCTTCATGCGTTTATTGTTTCAAACAATGAACAAAACTGCTGATGATGCTTCTAATCATCCTATTGGTTCTAAGAAATATGCAACAAATCAAGCTACTATATCTGGATTTCAGAATTTGTACTGTTTGGCTCAGTGTACACCTGATTTGTCACCTCAAGATTGTACAAGGTGTCTTGCTGGTGTCATTGGGGACCTTCCTTGGTGTTGTATGGGAAAACAAGGTGGAAGAGTTTTATATCCTAGCTGTAATGTTAGATATGAACTGTACCCTTTTTTTCGAGTCGACAATGCTTCATCGCCATCTCCTTCATCGTCAATTCTTCCTCCGGCTGCAACTACTGATTCGGCTAATTCCCGAGGAGGAAGCAGTGGAATATCAGGTGGGACTATTGTTGCAATTGTAGTTCCAATCATAGTTGTTGCGCTTCTATTTATTGTGGCCATTTGTTTCTTGAGTAAAAGGGCAAGGAAGAAGCGTGATTCTCTACAAGATGGAAACACTGCAAATGATATCAGCAGTATGGAGTCCTTACAATTTGATTTCGGCACCATTGAAGCAGCCACCAACAAATTCTCTGCAGATAATAAGTTAGGTGAAGGTGGATTTGGTGAAGTTTTTAAGGGAACTCTTCCAAGTGGACAAGAAATAGCTGTCAAGAGACTCTCCAAAAGTTCTGGACAAGGTGGAGCAGAATTTAAGAATGAAGTTGTTGTAGTTGCCAAGCTTCAGCACAGAAATTTGGCTAGGCTTCTTGGATTTTGTTTGCAAGGAGAGGAAAAGATACTTGTTTATGAATATGTAGCCAACAAAAGTTTGGACTATACTCTATTTGATCCCGAAAAGCAAGGGAAACTAGATTGGGCAAGGCGATACAAGATTATTGGAGGGATTGCTCGAGGCATGCAATATCTTCATGAAGATTCTAGGCTTAGAATTATACACCGTGATCTTAAAGCTAGCAACATATTGTTGGATGGAGATATGAATCCAAAAATCTCGGATTTTGGCATGGCAAGAATAGTTGGAGTTGATCAAACTCAAGGAAACACTAGCAGAATTGTAGGAACTTACGGTTACATGGCTCCAGAGTATGCAATGCATGGAGAGTTTTCAGTAAAGTCTGATGTATACAGTTTTGGAGTTCTCGTTATGGAGATTATAAGTGGCAAGAAAAATAGCTCTTTCTATGACACTGATGGTGCTGATGATCTAGTGAGCTATACATGGAAAGTTTGGAAAGAAGGAGCACCATTAGAACTAGTGGACCCTATATTAAGAGAAAAAATTACTCCAAATGAAGTTATCAGAAGCATTCATATTGGTTTACTTTGTGTTCAAGAAGATCCAAGTGACAGACCAACAATGGCATCGATAGTTCTTATGCTTGACAGTAACACAGTTACTCTTCCAACTCCGAAGCAGCCTGCATTTTTCGTCAACAGTATTGCAACTGATTCAAACAGGCCGAAGGAGCTGCGATTTGATTCTTCTACAACAAAGTCAATAACAAATTCTGTGAATGAGATGTCAATTAGTGAAATGGATCCGCGATAA 1767 0.4041 MCRGDVSLPLCRQCVLNATQTLFSECSLSKQAVIWYDECTVRYSNRSFFSTFDTRPRVGLLNTANITNQKSFMRLLFQTMNKTADDASNHPIGSKKYATNQATISGFQNLYCLAQCTPDLSPQDCTRCLAGVIGDLPWCCMGKQGGRVLYPSCNVRYELYPFFRVDNASSPSPSSSILPPAATTDSANSRGGSSGISGGTIVAIVVPIIVVALLFIVAICFLSKRARKKRDSLQDGNTANDISSMESLQFDFGTIEAATNKFSADNKLGEGGFGEVFKGTLPSGQEIAVKRLSKSSGQGGAEFKNEVVVVAKLQHRNLARLLGFCLQGEEKILVYEYVANKSLDYTLFDPEKQGKLDWARRYKIIGGIARGMQYLHEDSRLRIIHRDLKASNILLDGDMNPKISDFGMARIVGVDQTQGNTSRIVGTYGYMAPEYAMHGEFSVKSDVYSFGVLVMEIISGKKNSSFYDTDGADDLVSYTWKVWKEGAPLELVDPILREKITPNEVIRSIHIGLLCVQEDPSDRPTMASIVLMLDSNTVTLPTPKQPAFFVNSIATDSNRPKELRFDSSTTKSITNSVNEMSISEMDPR 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00058 588 MobiDBLite consensus disorder prediction 170 190 - -
Trre10g00058 588 ProSiteProfiles Protein kinase domain profile. 262 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00058 588 CDD STKc_IRAK 268 534 - -
Trre10g00058 588 SUPERFAMILY Protein kinase-like (PK-like) 247 561 IPR011009 -
Trre10g00058 588 FunFam Cysteine-rich receptor-like protein kinase 25 56 162 - -
Trre10g00058 588 ProSiteProfiles Gnk2-homologous domain profile. 54 162 IPR002902 -
Trre10g00058 588 ProSitePatterns Serine/Threonine protein kinases active-site signature. 383 395 IPR008271 GO:0004672|GO:0006468
Trre10g00058 588 FunFam cysteine-rich receptor-like protein kinase 10 338 540 - -
Trre10g00058 588 MobiDBLite consensus disorder prediction 560 588 - -
Trre10g00058 588 MobiDBLite consensus disorder prediction 567 582 - -
Trre10g00058 588 ProSitePatterns Protein kinases ATP-binding region signature. 268 290 IPR017441 GO:0005524
Trre10g00058 588 ProSiteProfiles Gnk2-homologous domain profile. 1 48 IPR002902 -
Trre10g00058 588 Gene3D Transferase(Phosphotransferase) domain 1 338 542 - -
Trre10g00058 588 Gene3D Phosphorylase Kinase; domain 1 223 337 - -
Trre10g00058 588 Pfam Protein tyrosine and serine/threonine kinase 264 531 IPR001245 GO:0004672|GO:0006468
Trre10g00058 588 Gene3D - 1 48 IPR038408 -
Trre10g00058 588 Gene3D - 57 162 IPR038408 -
Trre10g00058 588 SMART serkin_6 262 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00058 588 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 223 337 - -
Trre10g00058 588 Pfam Salt stress response/antifungal 65 160 IPR002902 -
Trre10g00058 588 Pfam Salt stress response/antifungal 1 45 IPR002902 -
Trre10g00058 588 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 10 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00058 Trre-Chr10 444999 447970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00058 1 588 Receptor kinase-like Gene Family AT4G05200 56.376 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre10g00058 PK_Tyr_Ser-Thr 7.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00058 - - vun:114173511 916.761