Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00055 ATGGCTTCTGCAAAACATAAACTTCTTCTTTGCATATGTCTGTGTCTGATTCTGAACTTGTTCATAACAACAACAAAAGCAACACCAACTTACACAACAACTCATTGCACAAACAAAACCACTTATGCACCCAACACCACTTTCCATACCAATCTCGACATCCTCTTCTATTATTTCTCCAACAATATCTCCCAATCCAACGGTTACTTTTTCTCCATCACCGGTTTCAACACCGACGATGCTGTCGGCGGACTCTACCTCTGCCGCGGCGACGTCACCACCACAGTCTGTGATCAGTGTCTCACCGCAGCAGTCAAAGAGATAAGAATTCGGTGTCCGAATCAAAGAGAGGCTCTGATTTGGTACGACGAGTGCTTCCTCCGTTACACAAACAGTTACTTCGCCGTCGATAAGATCGTTCCTAGAGCAAACTTCGACGACGGAAATATTTCCTCCGGCGTTGACTTTGAAAGATTCAACCGATCTCTGCATGGATTGCTGAATGATTTGGTAACGGAAGCCGCGGCGAGTTTACAGTCGAAGAAGTTCGCCGCCGGCGAAACTGCGGTGACGGAGTCGATGAAGTTGTATGGATTGGTGCAGTGCACGAATGAGTTAACGAATAGTGATTGTGGGACGTGTTTGCGAAATGCAATTGGAACTCTTCCGAATGGAAAACAGGGCGCAAGAGCTTTGCTTCCGTCTTGTAATGTTAGATACCAACTCTACCCTTTTTCCACTTTATCTTCAACATCATCTTCAGGGGATAGCAAACTTGGACCTGGTACAATTGCGGTCGTGATTGTTGTACCCATTGTTTTCCTAATTATCTTATTCTTTGGTTGCTACTATTTCAAGAGAAGGTCCAAGATGAAGAAGAGACTAATGCCTAGTTTGATGGAAAATTTTGGGGATGAAATTCCAACATTGGAGTCATTGCAATTCAATTTGGTTACTCTAGAAGCTGCCACTAGTCATTTCTCATTTCAGAATAAGATTGGAAGCGGAGGATTTGGAGAAGTTTACAAGGGGGTTTTGTTAGATGGACGACAAATAGCCGTAAAAAAACTTTCAAAAAGCTCAGGACAAGGCACGATAGAATTCAAAAATGAGATTGTGTTAATAGCCAAACTCCAGCATAGAAATTTGGTAACCTTATATGGATTTTGCTCGGAAGAACAAGAAAAAATGCTTGTTTATGAATATGTACCTAATAAAAGTCTTGATTATTTCTTATTCGATCCTAATAAAGGAAGAGTTTTGAGTTGGGATGAGAGATATAAAATCATAGGCGGAATTGCACGAGGAATTCATTACTTACATGATCAATCAAGACTTAAAGTTATACACCGTGATCTCAAACCTAGCAATATATTGTTAGATGAGATGATGAATCCAAAAATATCGGACTTTGGTATGGCAAAAATTATTGATATAGATCAACATCAAGGAAATACTAAGAGGATTGCTGGAACTTATGGTTATATGTCTTCCGAATATGCAATGCATGGACATTATTCAGAAAAATCGGATGTGTTTAGCTTTGGAGTAATAATTATAGAGATAATTAGTGCAAAGCGGAATGCACTTAGTATTGGTTCACCGGTTTTTGATGACGTTTTGAGTTATGCTTGGAAAAACTGGAGGGATGAAAAACCGCTAGAAGTATTGGACTCTGATATAAAAAAATCATTTTCCTACAGTGAAGTCATTAAATGCATTCAAATTGGTTTATTATGTGTGCAACAAAACCCAGATGATAGACCAACAATGGAAAGAGTTGTTTCATATTTGAGCAGTGTTTCAGTGGAGTTACCATTGCCTCAAGAGCCCGCAGGTTTCATGGCTAATGGAACGAATCCAAGAATGATACCAAGGGATAATTCGGATCAACGTAACAATAGTAATTCTACTGGATCCTCAATCAATGATATGACCATGAGTCATTATTTCTCTCGATAG 1962 0.396 MASAKHKLLLCICLCLILNLFITTTKATPTYTTTHCTNKTTYAPNTTFHTNLDILFYYFSNNISQSNGYFFSITGFNTDDAVGGLYLCRGDVTTTVCDQCLTAAVKEIRIRCPNQREALIWYDECFLRYTNSYFAVDKIVPRANFDDGNISSGVDFERFNRSLHGLLNDLVTEAAASLQSKKFAAGETAVTESMKLYGLVQCTNELTNSDCGTCLRNAIGTLPNGKQGARALLPSCNVRYQLYPFSTLSSTSSSGDSKLGPGTIAVVIVVPIVFLIILFFGCYYFKRRSKMKKRLMPSLMENFGDEIPTLESLQFNLVTLEAATSHFSFQNKIGSGGFGEVYKGVLLDGRQIAVKKLSKSSGQGTIEFKNEIVLIAKLQHRNLVTLYGFCSEEQEKMLVYEYVPNKSLDYFLFDPNKGRVLSWDERYKIIGGIARGIHYLHDQSRLKVIHRDLKPSNILLDEMMNPKISDFGMAKIIDIDQHQGNTKRIAGTYGYMSSEYAMHGHYSEKSDVFSFGVIIIEIISAKRNALSIGSPVFDDVLSYAWKNWRDEKPLEVLDSDIKKSFSYSEVIKCIQIGLLCVQQNPDDRPTMERVVSYLSSVSVELPLPQEPAGFMANGTNPRMIPRDNSDQRNNSNSTGSSINDMTMSHYFSR 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00055 653 MobiDBLite consensus disorder prediction 618 653 - -
Trre10g00055 653 ProSiteProfiles Gnk2-homologous domain profile. 141 245 IPR002902 -
Trre10g00055 653 Gene3D Phosphorylase Kinase; domain 1 288 402 - -
Trre10g00055 653 SUPERFAMILY Protein kinase-like (PK-like) 313 617 IPR011009 -
Trre10g00055 653 ProSiteProfiles Gnk2-homologous domain profile. 30 134 IPR002902 -
Trre10g00055 653 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 26 648 - -
Trre10g00055 653 ProSitePatterns Protein kinases ATP-binding region signature. 333 356 IPR017441 GO:0005524
Trre10g00055 653 CDD STKc_IRAK 333 592 - -
Trre10g00055 653 Gene3D Transferase(Phosphotransferase) domain 1 403 606 - -
Trre10g00055 653 Gene3D - 29 134 IPR038408 -
Trre10g00055 653 Gene3D - 142 245 IPR038408 -
Trre10g00055 653 Pfam Protein kinase domain 328 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00055 653 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 287 402 - -
Trre10g00055 653 FunFam cysteine-rich receptor-like protein kinase 10 403 605 - -
Trre10g00055 653 SMART serkin_6 327 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00055 653 ProSiteProfiles Protein kinase domain profile. 327 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00055 653 FunFam Cysteine-rich receptor-like protein kinase 10 143 245 - -
Trre10g00055 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Trre10g00055 653 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 29 134 - -
Trre10g00055 653 MobiDBLite consensus disorder prediction 622 653 - -
Trre10g00055 653 Pfam Salt stress response/antifungal 157 242 IPR002902 -
Trre10g00055 653 Pfam Salt stress response/antifungal 36 131 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00055 Trre-Chr10 429028 433281 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00055 16 653 Receptor kinase-like Gene Family AT4G05200 43.413 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre10g00055 Pkinase 7.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00055 - - mtr:11442717 1023.85