Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00054 ATGGCTTCTGCAAAACATAAACTTCTTCTTTGCATATGTCTGTGTCTGATTCTGAACTTGTTCATAACAACAACAAAAGCAACACCAACTTACACAACAACTCATTGCACAAACAAAACCACTTATGCACCCAACACCACTTTCCATACCAATCTCGACATCCTCTTCTATTATTTCTCCAACAATATCTCCCAATCCAACGGTTACTTTTTCTCCATCACCGGTTTCAACACCGACGATGCTGTCGGCGGACTCTACCTCTGCCGCGGCGACGTCACCACCACAGTCTGTGATCAGTGTCTCACCGCAGCAGTCAAAGAGATAAGAATTCGGTGTCCGAATCAAAGAGAGGCTCTGATTTGGTACGACGAGTGCTTCCTCCGTTACACAAACAGTTACTTCGCCGTCGATAAGATCGTTCCTAGAGCAAACTTCGACGACGGAAATATTTCCTCCGGCGTTGACTTTGAAAGATTCAACCGATCTCTGCATGGATTGCTGAATGATTTGGTAACGGAAGCCGCGGCGAGTTTACAGTCGAAGAAGTTCGCCGCCGGCGAAACTGCGGTGACGGAGTCGATGAAGTTGTATGGATTGGTGCAGTGCACGAATGAGTTAACGAATAGTGATTGTGGGACGTGTTTGCGAAATGCAATTGGAACTCTTCCGAATGGAAAACAGGGCGCAAGAGCTTTGCTTCCGTCTTGTAATGTTAGATACCAACTCTACCCTTTTTCCACTTTATCTTCAACATCATCTTCAGGGGATAGCAAACTTGGACCTGGTACAATTGCGGTCGTGATTGTTGTACCCATTGTTTTCCTAATTATCTTATTCTTTGTTGGGGATGAAATTCCAACATTGGAGTCATTGCAATTCAATTTGGTTACTCTAGAAGCTGCCACTAGTCATTTCTCATTTCAGAATAAGATTGGAAGCGGAGGATTTGGAGAAGTTTACAAGGGGGTTTTGTTAGATGGACGACAAATAGCCGTAAAAAAACTTTCAAAAAGCTCAGGACAAGGCACGATAGAATTCAAAAATGAGATTGTGTTAATAGCCAAACTCCAGCATAGAAATTTGGTAACCTTATATGGATTTTGCTCGGAAGAACAAGAAAAAATGCTTGTTTATGAATATGTACCTAATAAAAGTCTTGATTATTTCTTATTCGATCCTAATAAAGGAAGAGTTTTGAGTTGGGATGAGAGATATAAAATCATAGGCGGAATTGCACGAGGAATTCATTACTTACATGATCAATCAAGACTTAAAGTTATACACCGTGATCTCAAACCTAGCAATATATTGTTAGATGAGATGATGAATCCAAAAATATCGGACTTTGGTATGGCAAAAATTATTGATATAGATCAACATCAAGGAAATACTAAGAGGATTGCTGGAACTTATGGTTATATGTCTTCCGAATATGCAATGCATGGACATTATTCAGAAAAATCGGATGTGTTTAGCTTTGGAGTAATAATTATAGAGATAATTAGTGCAAAGCGGAATGCACTTAGTATTGGTTCACCGGTTTTTGATGACGTTTTGAGTTATGCTTGGAAAAACTGGAGGGATGAAAAACCGCTAGAAGTATTGGACTCTGATATAAAAAAATCATTTTCCTACAGTGAAGTCATTAAATGCATTCAAATTGGTTTATTATGTGTGCAACAAAACCCAGATGATAGACCAACAATGGAAAGAGTTGTTTCATATTTGAGCAGTGTTTCAGTGGAGTTACCATTGCCTCAAGAGCCCGCAGGTTTCATGGCTAATGGAACGAATCCAAGAATGATACCAAGGGATAATTCGGATCAACGTAACAATAGTAATTCTACTGGATCCTCAATCAATGATATGACCATGAGTCATTATTTCTCTCGATAG 1896 0.3972 MASAKHKLLLCICLCLILNLFITTTKATPTYTTTHCTNKTTYAPNTTFHTNLDILFYYFSNNISQSNGYFFSITGFNTDDAVGGLYLCRGDVTTTVCDQCLTAAVKEIRIRCPNQREALIWYDECFLRYTNSYFAVDKIVPRANFDDGNISSGVDFERFNRSLHGLLNDLVTEAAASLQSKKFAAGETAVTESMKLYGLVQCTNELTNSDCGTCLRNAIGTLPNGKQGARALLPSCNVRYQLYPFSTLSSTSSSGDSKLGPGTIAVVIVVPIVFLIILFFVGDEIPTLESLQFNLVTLEAATSHFSFQNKIGSGGFGEVYKGVLLDGRQIAVKKLSKSSGQGTIEFKNEIVLIAKLQHRNLVTLYGFCSEEQEKMLVYEYVPNKSLDYFLFDPNKGRVLSWDERYKIIGGIARGIHYLHDQSRLKVIHRDLKPSNILLDEMMNPKISDFGMAKIIDIDQHQGNTKRIAGTYGYMSSEYAMHGHYSEKSDVFSFGVIIIEIISAKRNALSIGSPVFDDVLSYAWKNWRDEKPLEVLDSDIKKSFSYSEVIKCIQIGLLCVQQNPDDRPTMERVVSYLSSVSVELPLPQEPAGFMANGTNPRMIPRDNSDQRNNSNSTGSSINDMTMSHYFSR 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00054 631 Gene3D - 142 245 IPR038408 -
Trre10g00054 631 Gene3D - 29 134 IPR038408 -
Trre10g00054 631 ProSitePatterns Protein kinases ATP-binding region signature. 311 334 IPR017441 GO:0005524
Trre10g00054 631 ProSiteProfiles Gnk2-homologous domain profile. 141 245 IPR002902 -
Trre10g00054 631 FunFam Cysteine-rich receptor-like protein kinase 10 143 245 - -
Trre10g00054 631 Pfam Salt stress response/antifungal 157 242 IPR002902 -
Trre10g00054 631 Pfam Salt stress response/antifungal 36 131 IPR002902 -
Trre10g00054 631 ProSiteProfiles Gnk2-homologous domain profile. 30 134 IPR002902 -
Trre10g00054 631 FunFam cysteine-rich receptor-like protein kinase 10 381 583 - -
Trre10g00054 631 Pfam Protein kinase domain 306 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00054 631 Gene3D Transferase(Phosphotransferase) domain 1 381 584 - -
Trre10g00054 631 MobiDBLite consensus disorder prediction 596 631 - -
Trre10g00054 631 CDD STKc_IRAK 311 570 - -
Trre10g00054 631 Gene3D Phosphorylase Kinase; domain 1 283 380 - -
Trre10g00054 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672|GO:0006468
Trre10g00054 631 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 26 626 - -
Trre10g00054 631 SMART serkin_6 305 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00054 631 FunFam Cysteine-rich receptor-like protein kinase 10 280 380 - -
Trre10g00054 631 MobiDBLite consensus disorder prediction 600 631 - -
Trre10g00054 631 ProSiteProfiles Protein kinase domain profile. 305 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00054 631 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 29 134 - -
Trre10g00054 631 SUPERFAMILY Protein kinase-like (PK-like) 291 595 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00054 Trre-Chr10 429028 433281 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00054 16 631 Receptor kinase-like Gene Family AT4G05200 42.857 0.0 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre10g00054 Pkinase 7.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00054 - - mtr:11442717 969.148