Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00053 ATGGTTACTCCAATACACAAACTTCTTTGCACATGTCTGTGTGTGATGCTGAACTTGTTCATAACAACAACAAAAGCAACTCCAACTTACACAACTACTCACTGCACAAACACAACCACTTATGCACCCAACACCACTTTCCATACCAATCTCAATATCCTCTTCTACTATTTCTCCAACAACATCTCCCAATCCAACGGCTACTTTTTAACTATCACCGGTTTTGGCACCGCAGATGCCGTCAGCGGACTCTATCTCTGTCGCGGTGATGTCACTGCCGCAGTCTGCGACCAGTGTCTCACCGCTGCAGTCAAAGAGATAAGAGTCCGGTGTCCGAATCAAAGAGAGGCTCTGATTTGGTACGACGAGTGCTTCCTCCGTTTCACAAACAGTTGTATACATTCTCAGGGGATTTTGCAAGATGGACGACAAATAGCCGTAAAGAAACTTTCAAAAAATTCAGGACAAGGCACGATAGAATTTAGAAATGAGATTGTGTTAATAGCCAAACTACAACATAGAAATTTGGTAACTTTGTATGGATTTTGCTCTGAGGAACAAGAAAAAATGCTTGTGTATGAATACGTACCTAATAAAAGTCTTGATTACTTCTTATTCGATCGTAATAAAGAAAGAGTCTTGAGTTGGCATGAAAGATATAAAATTATAGGCGGAATTGCTCGTGGAATTCATTACTTACACGATCAATCAAGACTTAAAGTCATACATCGTGATCTCAAACCTAGCAATATATTGTTAGATGTGATGATGAATCCAAAAATATCTGACTTTGGTATGGCAAAAATGATTGATATAGATCAACATCAAGGAAATACTAATAGGATTGCTGGCACTTATGGTTATATGTCTTCTGAATATGCAATGCATGGACATTATTCAGAAAAATCAGATGTGTTTAGTTTTGGAGTTATAATTATAGAGATAATTAGTGCAAAACGGAATGCCCCTAGTTTTGATTCACCTGATTTTGATGACCTCTTAAATTATGTTTGGAAAAATTGGAGGGATGAAAAAGTGCTAGAATGTTTCAGCGGAGTTACCATTGCTTCAAGAGCCTGCAGTAATACTGTGGGATCCTCAATCAATGATATGACCATGAGTCATTCTTTTCCTCGATAG 1140 0.3825 MVTPIHKLLCTCLCVMLNLFITTTKATPTYTTTHCTNTTTYAPNTTFHTNLNILFYYFSNNISQSNGYFLTITGFGTADAVSGLYLCRGDVTAAVCDQCLTAAVKEIRVRCPNQREALIWYDECFLRFTNSCIHSQGILQDGRQIAVKKLSKNSGQGTIEFRNEIVLIAKLQHRNLVTLYGFCSEEQEKMLVYEYVPNKSLDYFLFDRNKERVLSWHERYKIIGGIARGIHYLHDQSRLKVIHRDLKPSNILLDVMMNPKISDFGMAKMIDIDQHQGNTNRIAGTYGYMSSEYAMHGHYSEKSDVFSFGVIIIEIISAKRNAPSFDSPDFDDLLNYVWKNWRDEKVLECFSGVTIASRACSNTVGSSINDMTMSHSFPR 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00053 379 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 136 349 - -
Trre10g00053 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Trre10g00053 379 Gene3D Transferase(Phosphotransferase) domain 1 196 373 - -
Trre10g00053 379 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 28 133 - -
Trre10g00053 379 Pfam Protein kinase domain 140 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00053 379 Pfam Salt stress response/antifungal 35 130 IPR002902 -
Trre10g00053 379 SMART serkin_6 126 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00053 379 ProSiteProfiles Gnk2-homologous domain profile. 29 133 IPR002902 -
Trre10g00053 379 ProSiteProfiles Protein kinase domain profile. 67 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00053 379 Gene3D Phosphorylase Kinase; domain 1 128 195 - -
Trre10g00053 379 FunFam Lectin-domain containing receptor kinase A4.3 196 355 - -
Trre10g00053 379 SUPERFAMILY Protein kinase-like (PK-like) 139 346 IPR011009 -
Trre10g00053 379 FunFam Uncharacterized protein 130 195 - -
Trre10g00053 379 Gene3D - 28 127 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00053 Trre-Chr10 424650 426672 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00053 136 348 Receptor kinase-like Gene Family AT4G23190 62.037 2.89e-91 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre10g00053 Pkinase 1.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00053 - - cam:101500396 390.963