LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre10g00052	ATGGCTACTCCAAAATACAATTGGGCTGCACTTCTACTTTCCATATGTCTGTGTGTGATGATCAACTTGTTCATAACAACAACAAAAGCAACACCAACTTACACAACAACTCGTTGCACAAACACAACCACTTACGCACCCAACTCCAATTTCCAAACCGATATCGATACCCTCTTCTTACATCTCTCCCGCGGCGGTCTTCAGTTTTGGATTCGCGCCATTATGGGTAAGTCCAGTATCATGAACGCATTCTTCCTTTGCCGTGGCGACATCACCACCACCGACTGCGATCAGTGTCTCACCGCCGCAGTCAAAGAGATAAAAATTCAATGTCCAAACCAAACCGAAGCTCTGATTTGGTATGACGAATGCTTCCTTCGTTTCACAGACAGGTATTTCGCCGTCGATAAAATCATCCCTAGAGCAAACCTAGACGATGGAAATATCGACTCCGGCATAAACTTGGGAAGATTCAACCAATCCCTGCATGGATTGCTGAATCGTTTGGCAACGGAAGCCGCCTCCTACAGTGAGAAGAAGTTCGCCACCGGCGAAGCTGTGGTGACGGAGTCGATGAAGTTGTATGGATTAATGCAGTGTGTGAATAACTTACATAAAAGTGAGTGTGACAAGTGTTTGCGAGATGCAATTGGAACTCTTCCGAATGGAAAACAGGGCGCCAGAGCTTTGCTTCCATCTTGTAATGTTAGATACCAACTCCACCCTTTTTTTAATCAATCTTCTTCATCAACAGGGGATAAGAAACTTGGACGATCGGGCACAATTGCAGTTGCGGTTGTCTTGCCCGTTGTTTTCCTAATTATCTTATTTTTGTGTTGCTACGATTTCAAGAGACGGTCCAAGAAGAAGAGAGTAATGGCTAGTCTGATGGAAAATTTTGAGGATGAAATTCCAACATTGGAGTCATTGCAATTCAATTTGGCTACTCTAGAAGCAGCCACTAACCAGTTCTCATTGCAGAATAAGATTGGAAGCGGGGGATTTGGAGAAGTTTACAAGGGGGTTTTGCTAGATGGGCGACAAATAGCCGTAAAAAAACTTTCGAAATATTCAGGACAAGGCACGATAGAATTCAAAAATGAGATCGTATTAATAGCAAAACTGCAACATAGAAATTTGGTAACTTTGTATGGATTTTGCTCTGAAGAACAAGAGAAAATGCTTGTTTATGAATATGTAGCTAATAAAAGTCTAGATTCCTTCTTATTTGATCCTAATAAAAGAAGAGTTTTGAGTTGGCATGAAAGATATAGAATCATAGGCGGAATCGCGCGAGGAATTCATTACTTACATGATCAATCAAGACTAAAAGTCATACACCGTGATCTTAAACCTAGCAATATATTGTTAGATGAGATGATGAATCCAAAAATATCTGACTTTGGTATGGCAAAAATGATTGATATAAATCAACATCAAGGAAATACAAAGAGAATTGTCGGGACTTATGGTTATATGTCTTCTGAATATGCAATGCATGGACACTATTCGGAGAAATCAGATGTATTTAGCTTCGGGGTCATAATTTTAGAGATAATTAGTTCAAAGCGGAATGCACGTAGCCTTGGTTCACCAGATTTTAATGATCTCTTAAGTTATGCTTGGAAAAACTGGAAGGATGAAACACAACTAGAAGTATTGGACTCTGATATTGAAAAGTCATTTTGTCACAGTGAAGTGATTAAATGCATTCAAATTGGCTTGTTATGTGTGCAACAAAATCCATTTGATAGACCAACAATGGAAAGAATTGTCTCGTATCTGAGTAGTGTATCGGCGGAGTTACCATTGCCTCAAGAGCCTGCAGGATTCATGGCTAATGGAACGAATCCAAGCATGATACCAAGGATTAATTCCTCAGTCAATAATATGACAATGAGTCTTACTTTTCCCCGATAA	1920	0.4	MATPKYNWAALLLSICLCVMINLFITTTKATPTYTTTRCTNTTTYAPNSNFQTDIDTLFLHLSRGGLQFWIRAIMGKSSIMNAFFLCRGDITTTDCDQCLTAAVKEIKIQCPNQTEALIWYDECFLRFTDRYFAVDKIIPRANLDDGNIDSGINLGRFNQSLHGLLNRLATEAASYSEKKFATGEAVVTESMKLYGLMQCVNNLHKSECDKCLRDAIGTLPNGKQGARALLPSCNVRYQLHPFFNQSSSSTGDKKLGRSGTIAVAVVLPVVFLIILFLCCYDFKRRSKKKRVMASLMENFEDEIPTLESLQFNLATLEAATNQFSLQNKIGSGGFGEVYKGVLLDGRQIAVKKLSKYSGQGTIEFKNEIVLIAKLQHRNLVTLYGFCSEEQEKMLVYEYVANKSLDSFLFDPNKRRVLSWHERYRIIGGIARGIHYLHDQSRLKVIHRDLKPSNILLDEMMNPKISDFGMAKMIDINQHQGNTKRIVGTYGYMSSEYAMHGHYSEKSDVFSFGVIILEIISSKRNARSLGSPDFNDLLSYAWKNWKDETQLEVLDSDIEKSFCHSEVIKCIQIGLLCVQQNPFDRPTMERIVSYLSSVSAELPLPQEPAGFMANGTNPSMIPRINSSVNNMTMSLTFPR	639

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre10g00052	639	Gene3D	Transferase(Phosphotransferase) domain 1	400	604	-	-
	Trre10g00052	639	CDD	STKc_IRAK	330	595	-	-
	Trre10g00052	639	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	445	457	IPR008271	GO:0004672\|GO:0006468
	Trre10g00052	639	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	31	616	-	-
	Trre10g00052	639	ProSiteProfiles	Gnk2-homologous domain profile.	140	243	IPR002902	-
	Trre10g00052	639	ProSiteProfiles	Gnk2-homologous domain profile.	33	133	IPR002902	-
	Trre10g00052	639	SMART	serkin_6	324	595	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g00052	639	Gene3D	-	143	243	IPR038408	-
	Trre10g00052	639	Gene3D	-	32	133	IPR038408	-
	Trre10g00052	639	Pfam	Salt stress response/antifungal	39	130	IPR002902	-
	Trre10g00052	639	Pfam	Salt stress response/antifungal	156	239	IPR002902	-
	Trre10g00052	639	ProSiteProfiles	Protein kinase domain profile.	324	595	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g00052	639	FunFam	cysteine-rich receptor-like protein kinase 10	400	602	-	-
	Trre10g00052	639	ProSitePatterns	Protein kinases ATP-binding region signature.	330	353	IPR017441	GO:0005524
	Trre10g00052	639	SUPERFAMILY	Protein kinase-like (PK-like)	310	615	IPR011009	-
	Trre10g00052	639	FunFam	Cysteine-rich receptor-like protein kinase 10	284	399	-	-
	Trre10g00052	639	Pfam	Protein kinase domain	325	593	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g00052	639	Gene3D	Phosphorylase Kinase; domain 1	283	399	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre10g00052	Trre-Chr10	419454	423540	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre10g00052	19	639	Receptor kinase-like Gene Family	AT4G05200	42.556	4.35e-178	520

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Trre10g00052		Pkinase	1.4e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre10g00052	-		-	mtr:11442717	916.376