LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre10g00051	ATGGCTACTCCAAAATACAATTGGGCTGCACTTCTACTTTCCATATGTCTGTGTGTGATGATCAACTTGTTCATAACAACAACAAAAGCAACACCAACTTACACAACAACTCGTTGCACAAACACAACCACTTACGCACCCAACTCCAATTTCCAAACCGATATCGATACCCTCTTCTTACATCTCTCCCGCGGCGGTCTTCAGTTTTGGATTCGCGCCATTATGGGTAAGTCCAGTATCATGAACGCATTCTTCCTTTGCCGTGGCGACATCACCACCACCGACTGCGATCAGTGTCTCACCGCCGCAGTCAAAGAGATAAAAATTCAATGTCCAAACCAAACCGAAGCTCTGATTTGGTATGACGAATGCTTCCTTCGTTTCACAGACAGGTATTTCGCCGTCGATAAAATCATCCCTAGAGCAAACCTAGACGATGGAAATATCGACTCCGGCATAAACTTGGGAAGATTCAACCAATCCCTGCATGGATTGCTGAATCGTTTGGCAACGGAAGCCGCCTCCTACAGTGAGAAGAAGTTCGCCACCGGCGAAGCTGTGGTGACGGAGTCGATGAAGTTGTATGGATTAATGCAGTGTGTGAATAACTTACATAAAAGTGAGTGTGACAAGTGTTTGCGAGATGCAATTGGAACTCTTCCGAATGGAAAACAGGGCGCCAGAGCTTTGCTTCCATCTTGTAATGTTAGATACCAACTCCACCCTTTTTTTAATCAATCTTCTTCATCAACAGGGGATAAGAAACTTGGACGATCGGGCACAATTGCAGTTGCGGTTGTCTTGCCCGTTGTTTTCCTAATTATCTTATTTTTGTTTGAGGATGAAATTCCAACATTGGAGTCATTGCAATTCAATTTGGCTACTCTAGAAGCAGCCACTAACCAGTTCTCATTGCAGAATAAGATTGGAAGCGGGGGATTTGGAGAAGTTTACAAGGGGGTTTTGCTAGATGGGCGACAAATAGCCGTAAAAAAACTTTCGAAATATTCAGGACAAGGCACGATAGAATTCAAAAATGAGATCGTATTAATAGCAAAACTGCAACATAGAAATTTGGTAACTTTGTATGGATTTTGCTCTGAAGAACAAGAGAAAATGCTTGTTTATGAATATGTAGCTAATAAAAGTCTAGATTCCTTCTTATTTGATCCTAATAAAAGAAGAGTTTTGAGTTGGCATGAAAGATATAGAATCATAGGCGGAATCGCGCGAGGAATTCATTACTTACATGATCAATCAAGACTAAAAGTCATACACCGTGATCTTAAACCTAGCAATATATTGTTAGATGAGATGATGAATCCAAAAATATCTGACTTTGGTATGGCAAAAATGATTGATATAAATCAACATCAAGGAAATACAAAGAGAATTGTCGGGACTTATGGTTATATGTCTTCTGAATATGCAATGCATGGACACTATTCGGAGAAATCAGATGTATTTAGCTTCGGGGTCATAATTTTAGAGATAATTAGTTCAAAGCGGAATGCACGTAGCCTTGGTTCACCAGATTTTAATGATCTCTTAAGTTATGCTTGGAAAAACTGGAAGGATGAAACACAACTAGAAGTATTGGACTCTGATATTGAAAAGTCATTTTGTCACAGTGAAGTGATTAAATGCATTCAAATTGGCTTGTTATGTGTGCAACAAAATCCATTTGATAGACCAACAATGGAAAGAATTGTCTCGTATCTGAGTAGTGTATCGGCGGAGTTACCATTGCCTCAAGAGCCTGCAGGATTCATGGCTAATGGAACGAATCCAAGCATGATACCAAGGATTAATTCCTCAGTCAATAATATGACAATGAGTCTTACTTTTCCCCGATAA	1857	0.3996	MATPKYNWAALLLSICLCVMINLFITTTKATPTYTTTRCTNTTTYAPNSNFQTDIDTLFLHLSRGGLQFWIRAIMGKSSIMNAFFLCRGDITTTDCDQCLTAAVKEIKIQCPNQTEALIWYDECFLRFTDRYFAVDKIIPRANLDDGNIDSGINLGRFNQSLHGLLNRLATEAASYSEKKFATGEAVVTESMKLYGLMQCVNNLHKSECDKCLRDAIGTLPNGKQGARALLPSCNVRYQLHPFFNQSSSSTGDKKLGRSGTIAVAVVLPVVFLIILFLFEDEIPTLESLQFNLATLEAATNQFSLQNKIGSGGFGEVYKGVLLDGRQIAVKKLSKYSGQGTIEFKNEIVLIAKLQHRNLVTLYGFCSEEQEKMLVYEYVANKSLDSFLFDPNKRRVLSWHERYRIIGGIARGIHYLHDQSRLKVIHRDLKPSNILLDEMMNPKISDFGMAKMIDINQHQGNTKRIVGTYGYMSSEYAMHGHYSEKSDVFSFGVIILEIISSKRNARSLGSPDFNDLLSYAWKNWKDETQLEVLDSDIEKSFCHSEVIKCIQIGLLCVQQNPFDRPTMERIVSYLSSVSAELPLPQEPAGFMANGTNPSMIPRINSSVNNMTMSLTFPR	618

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre10g00051	618	ProSiteProfiles	Protein kinase domain profile.	303	574	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g00051	618	Gene3D	Transferase(Phosphotransferase) domain 1	379	583	-	-
	Trre10g00051	618	Pfam	Salt stress response/antifungal	156	239	IPR002902	-
	Trre10g00051	618	Pfam	Salt stress response/antifungal	39	130	IPR002902	-
	Trre10g00051	618	SUPERFAMILY	Protein kinase-like (PK-like)	289	594	IPR011009	-
	Trre10g00051	618	FunFam	cysteine-rich receptor-like protein kinase 10	379	581	-	-
	Trre10g00051	618	FunFam	Cysteine-rich receptor-like protein kinase 10	277	378	-	-
	Trre10g00051	618	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	424	436	IPR008271	GO:0004672\|GO:0006468
	Trre10g00051	618	ProSiteProfiles	Gnk2-homologous domain profile.	140	243	IPR002902	-
	Trre10g00051	618	ProSiteProfiles	Gnk2-homologous domain profile.	33	133	IPR002902	-
	Trre10g00051	618	SMART	serkin_6	303	574	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g00051	618	Gene3D	-	143	243	IPR038408	-
	Trre10g00051	618	Gene3D	-	32	133	IPR038408	-
	Trre10g00051	618	CDD	STKc_IRAK	309	574	-	-
	Trre10g00051	618	Gene3D	Phosphorylase Kinase; domain 1	279	378	-	-
	Trre10g00051	618	Pfam	Protein kinase domain	304	572	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g00051	618	ProSitePatterns	Protein kinases ATP-binding region signature.	309	332	IPR017441	GO:0005524
	Trre10g00051	618	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	31	595	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre10g00051	Trre-Chr10	419454	423540	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre10g00051	19	618	Receptor kinase-like Gene Family	AT4G05200	42.018	5.17e-175	511

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Trre10g00051		Pkinase	1.3e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre10g00051	-		-	mtr:11442717	870.922