LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre10g00028	ATGGCCACAACACCAATGGTATCTGGTCGAGAGTTGTCGAACCCTCCATCTGATGGAATCTCCAACATTCGATTCTCTAACCACAGTGATAATCTTCTCGTTTCCTCTTGGGACAAGACAGTGCGTCTCTACGATGCAACCGCAAATGTGCTTAAAGGAGAATTCCTTCACGGCGGACCCGTTCTTGACTGTTGCTTCCACGACGACTCTTCTGGATTCAGTGCCTCCGCCGATAACACTGTCAGGCGCCTCGTTTTCGCCACTGGCAAGGAGGATATTTTGGGAAAGCATGATGCTCCCGTTCGTTGTGTTGAGTACTCTTATGCCGCAGGGCAATTGATCACTGGTAGTTGGGACAAAACCATAAAGTGTTGGGACCCTAGAGGTGCAAGTGGACAAGAGCGCACTCTTGTTGGAACGTATCCACAGCCTGAGCGTATTTACTCTCTATCTCTTGTTGGACATCGGCTTGTTGTAGCAACAGCTGGAAGACATGTTAATGTTTATGACTTGAGGAACATGTCTTGTCCTGAACAACGGAGGGAATCTTCACTGAAATATCAAACCAGATGTGTACGCTGCTACCCAAATGGAACAGGATATGCACTTAGTTCCGTTGAAGGGCGGGTTGCAATGGAATTCTTTGACCTATCTGAGGCTAGCCAGGCAAAGAAATATGCTTTCAAGTGTCACAGAAAATCTGAAGCTGGAAGGGATATTGTCTACCCTGTAAATGCCATGGCATTCCACCCCATATATGGTACATTTGCCACAGGAGGTTGTGACGGTTTTGTTAATGTATGGGACGGAAACAACAAAAAGAGGCTGTATCAGTATTCAAAATATCCAACTAGCATTGCTGCACTCTCATTTAGCAGAGATGGACGCCTCCTAGCTGTTGCGTCAAGTTACACTTTTGAAGAGGGCCTAAAACCCCATGAACAAGATGCTATCTACGTTCGTAGCGTGAATGAGATTGAGGTCAAGCCAAAACCCAAAGCCCTTCCCAATCCTACAGCGTGA	1023	0.4663	MATTPMVSGRELSNPPSDGISNIRFSNHSDNLLVSSWDKTVRLYDATANVLKGEFLHGGPVLDCCFHDDSSGFSASADNTVRRLVFATGKEDILGKHDAPVRCVEYSYAAGQLITGSWDKTIKCWDPRGASGQERTLVGTYPQPERIYSLSLVGHRLVVATAGRHVNVYDLRNMSCPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAMAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGLKPHEQDAIYVRSVNEIEVKPKPKALPNPTA	340

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre10g00028	340	MobiDBLite	consensus disorder prediction	1	21	-	-
	Trre10g00028	340	Pfam	WD domain, G-beta repeat	94	126	IPR001680	GO:0005515
	Trre10g00028	340	Pfam	WD domain, G-beta repeat	18	45	IPR001680	GO:0005515
	Trre10g00028	340	Pfam	WD domain, G-beta repeat	228	269	IPR001680	GO:0005515
	Trre10g00028	340	ProSiteProfiles	Trp-Asp (WD) repeats profile.	94	126	IPR001680	GO:0005515
	Trre10g00028	340	PRINTS	G protein beta WD-40 repeat signature	113	127	IPR020472	-
	Trre10g00028	340	PRINTS	G protein beta WD-40 repeat signature	32	46	IPR020472	-
	Trre10g00028	340	PRINTS	G protein beta WD-40 repeat signature	256	270	IPR020472	-
	Trre10g00028	340	ProSiteProfiles	Trp-Asp (WD) repeats profile.	244	278	IPR001680	GO:0005515
	Trre10g00028	340	SMART	WD40_4	221	269	IPR001680	GO:0005515
	Trre10g00028	340	SMART	WD40_4	5	45	IPR001680	GO:0005515
	Trre10g00028	340	SMART	WD40_4	48	85	IPR001680	GO:0005515
	Trre10g00028	340	SMART	WD40_4	87	126	IPR001680	GO:0005515
	Trre10g00028	340	SMART	WD40_4	134	170	IPR001680	GO:0005515
	Trre10g00028	340	FunFam	Mitotic checkpoint protein bub3, putative	5	333	-	-
	Trre10g00028	340	Gene3D	-	4	334	IPR015943	GO:0005515
	Trre10g00028	340	SUPERFAMILY	WD40 repeat-like	16	303	IPR036322	GO:0005515
	Trre10g00028	340	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	94	126	-	-
	Trre10g00028	340	PANTHER	MRNA EXPORT FACTOR AND BUB3	10	326	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre10g00028	Trre-Chr10	257985	262028	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre10g00028	94	311	U-box Gene Family	AT2G33340	25.000	1.33e-07	51.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre10g00028	K02180		-	csin:114322693	651.358